Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C04
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879...    27   9.0  

>04_04_1532 -
           34187153-34187308,34187426-34187551,34187856-34187977,
           34188058-34188181,34189671-34189821,34190506-34190720,
           34191142-34191343,34191423-34191597,34191746-34192055,
           34192141-34192356
          Length = 598

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 152 RQIENNANLFIDK--NGWNKSQDGNRPEWIP 238
           + IE++ NLF  K    WNK +DGN   ++P
Sbjct: 309 KTIEDSWNLFHKKFVELWNKHKDGNGEAYLP 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,066,412
Number of Sequences: 37544
Number of extensions: 239477
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)