Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C04
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)                28   3.0  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         28   4.0  
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)                 27   9.2  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_26296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 92  ALLILGFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRP 226
           A +I GF+  +  C  +RY  Q+    N    +N W+ S   NRP
Sbjct: 6   ATIIRGFLKFRIICEKVRYFTQLRACYN--PQQNKWDTSHTNNRP 48


>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
          Length = 997

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +2

Query: 104 LGFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNY 283
           LG I SQA   NIR   Q   N +L +     N      +    P+Q GY+   PL +NY
Sbjct: 612 LGQITSQAIGSNIR---QDVANVSLPLQMPISNPKTSVPQGGATPMQFGYQGYGPLQHNY 668

Query: 284 NFIAFIFP 307
             +  IFP
Sbjct: 669 GDMNTIFP 676


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 15  LYLYLCYKICHINYFYY----YNLKWISCARFLYWVL 113
           ++L+    +CH+NY Y+    +++ W+    ++Y V+
Sbjct: 121 IWLFHVSLLCHVNYMYHVIWLFHVSWLCHVNYMYHVI 157


>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 107 GFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRPEWIP 238
           G +  +A C+  + K   E  A   I  NGWNK+ D    EW+P
Sbjct: 18  GPLIYEAKCIRGQLK---EKTARYLIHYNGWNKNWD----EWVP 54


>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
          Length = 587

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 241 NWDPFGTVPVLRFVPSVLVNK*IRVVFYLPFVS 143
           +W P   VP+ +  P V VNK +R +   P +S
Sbjct: 276 SWKPADVVPLPKLKPVVDVNKHLRPISLTPAIS 308


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 215  GNRPEWIPIQNGYRIQYPLDNNYNFIAFIFPN 310
            G+R  ++ IQNG +    ++ + +   ++FPN
Sbjct: 1122 GSRDSFVAIQNGRQWMLDIEESISIAFYVFPN 1153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,648
Number of Sequences: 59808
Number of extensions: 290511
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)