Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C04
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-17|CAI79269.1|  421|Caenorhabditis elegans Hypothetical...    27   8.1  

>AL117207-17|CAI79269.1|  421|Caenorhabditis elegans Hypothetical
           protein Y60A3A.25 protein.
          Length = 421

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 182 IDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNN 280
           +D   + + QD N   W+ + N  + Q P DNN
Sbjct: 106 MDMQPYQEYQDNNESGWVDLNNDNQFQQP-DNN 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,791,942
Number of Sequences: 27780
Number of extensions: 227911
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)