Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C03
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 28 0.59
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p... 27 1.0
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 2.4
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 25 3.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 4.1
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 24 7.2
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 24 7.2
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 24 7.2
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 24 9.5
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 9.5
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 0.59
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 39 TILAVLLGLVALTYVNGNKVKSYICQG-YYGCEKCCVHLGSGCEKLKSSPFW 191
T+L + L LV+ T + + C G YY CCV +GS C + S+P++
Sbjct: 9 TVLTLALSLVSKTSASQCSPRYGTCGGIYYDGPTCCV-VGSSC--IYSNPWY 57
>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 1.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 92 ITVDVSQGYEAQ*NSQDCEFRHF 24
+ VDV +G+E +++DCEF+ F
Sbjct: 162 MAVDVPEGFELLGSTEDCEFQIF 184
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 2.4
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = -1
Query: 289 LNTSKFNSLMESPKYGSTPSGQVQVQTSV*LPNQNGEDFNFSQPEPR*TQHFSQP 125
L+ FN + K V V PNQ + NFS QHFSQP
Sbjct: 192 LDPEVFNQQSKETKKSLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQP 246
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 75 TYVNGNKVKSYIC--QGYYGCEKCCVHLGSGCEKLKSSPFWFG 197
T+ + N++ C + +Y + C H G+ K ++S +W G
Sbjct: 361 TFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQTSAYWEG 403
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 119 ILRLREMLCSPWFRLREVKIL 181
+L+L E + PW REVK+L
Sbjct: 120 VLKLLENMPMPWEEYREVKVL 140
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 384 ETNEWFFLFKTSSNSHCFYT 325
E N+W L+K S N+ YT
Sbjct: 719 EINDWIGLYKLSDNASDLYT 738
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 15 TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 113
T E+ FTIL + GL+ + N + +Y C
Sbjct: 684 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 716
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 362 YLKQARTLIVFILLITLKTID 300
YL + RTL+ F L+ KTID
Sbjct: 872 YLNRERTLLNFYLIENSKTID 892
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 21 NEMSKFTILAVLLGLVALTYVNGNKVKSY 107
NE++ +I + L+ Y NGN++ S+
Sbjct: 864 NELANLSISSTAQVLLETLYANGNRLSSF 892
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 91 LPLT*VKATRPSKTARIVNFD 29
+P T +K+T SKT I+ FD
Sbjct: 1 MPATILKSTASSKTLLIIKFD 21
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,780
Number of Sequences: 5004
Number of extensions: 31266
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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