Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C03
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   1.2  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   1.2  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    27   3.6  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    27   3.6  
AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical ...    27   3.6  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    27   3.6  
U41015-11|AAM54187.1|  740|Caenorhabditis elegans Homeodomain in...    27   6.2  
U41015-10|AAA82316.1|  821|Caenorhabditis elegans Homeodomain in...    27   6.2  
U41015-9|AAM54186.1|  846|Caenorhabditis elegans Homeodomain int...    27   6.2  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    27   6.2  
U49954-2|AAY86289.1|  192|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 156  SGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDS 260
            SGCE+ + S       +    C CPDG+ P L  S
Sbjct: 4479 SGCERAQCSHLCVSLPSTGFACLCPDGIVPQLDGS 4513


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 156  SGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDS 260
            SGCE+ + S       +    C CPDG+ P L  S
Sbjct: 4479 SGCERAQCSHLCVSLPSTGFACLCPDGIVPQLDGS 4513


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 141  CVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPYLGDSIS 266
            C      C+++ +    FGS+     CTCPDG   ++GD I+
Sbjct: 2315 CAEKSHKCDRVATCRNTFGSHV----CTCPDG---HVGDGIT 2349


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 15  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 113
           T+ E SKF+I+  +   ++L  + G + K++IC
Sbjct: 104 TKEESSKFSIVEFVSVAMSLVSIRGVETKNFIC 136


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 15  TRNEMSKFTILAVLLGLVALTYVNGNKVKSYIC 113
           T+ E SKF+I+  +   ++L  + G + K++IC
Sbjct: 104 TKEESSKFSIVEFVSVAMSLVSIRGVETKNFIC 136


>AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical
           protein F27B3.5 protein.
          Length = 787

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 72  LTYVNGNKVKSY-ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPY 248
           L  V+ NK+++  + +    C  CC+ L    E ++     FGS+   C+   PD VD +
Sbjct: 280 LESVSQNKLETIDMFEAVAECTYCCL-LDKYLELVQVWFPQFGSHKMFCSILPPDPVDIF 338

Query: 249 LGDSIS 266
           LG S S
Sbjct: 339 LGVSSS 344


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 72  LTYVNGNKVKSY-ICQGYYGCEKCCVHLGSGCEKLKSSPFWFGSYTEVCTCTCPDGVDPY 248
           L  V+ NK+++  + +    C  CC+ L    E ++     FGS+   C+   PD VD +
Sbjct: 487 LESVSQNKLETIDMFEAVAECTYCCL-LDKYLELVQVWFPQFGSHKMFCSILPPDPVDIF 545

Query: 249 LGDSIS 266
           LG S S
Sbjct: 546 LGVSSS 551


>U41015-11|AAM54187.1|  740|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform c protein.
          Length = 740

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 265 LMESPKYGSTPSGQVQVQTSV*LPNQNGEDFNF 167
           L + P Y     GQ++V     L N+N E+FNF
Sbjct: 72  LKKHPSYAR--QGQIEVSILSRLSNENSEEFNF 102


>U41015-10|AAA82316.1|  821|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform a protein.
          Length = 821

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 265 LMESPKYGSTPSGQVQVQTSV*LPNQNGEDFNF 167
           L + P Y     GQ++V     L N+N E+FNF
Sbjct: 153 LKKHPSYAR--QGQIEVSILSRLSNENSEEFNF 183


>U41015-9|AAM54186.1|  846|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform b protein.
          Length = 846

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 265 LMESPKYGSTPSGQVQVQTSV*LPNQNGEDFNF 167
           L + P Y     GQ++V     L N+N E+FNF
Sbjct: 178 LKKHPSYAR--QGQIEVSILSRLSNENSEEFNF 208


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 8 protein.
          Length = 2329

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 107 HMPR-ILRLREMLCSPWFRLREVKIL 181
           +MP  +L+L E +  PW ++R+VK+L
Sbjct: 84  YMPHAVLKLLENMPMPWEQIRDVKVL 109


>U49954-2|AAY86289.1|  192|Caenorhabditis elegans Hypothetical
           protein Y102E9.5 protein.
          Length = 192

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 285 IRQNLIRLWSLLNTGRLRLDRYRCRPQCNFRTRTARILTSRSR 157
           + Q  +R WS+ N  R        R + + +TR  +++  RSR
Sbjct: 113 VAQKFVRFWSMDNLDRKNRHSNNVRHRYSDKTRHFQLINGRSR 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,853,114
Number of Sequences: 27780
Number of extensions: 184072
Number of successful extensions: 488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)