Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C02
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 30 1.0
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 29 2.3
01_01_0363 + 2850954-2853675,2853819-2854225 29 2.3
03_06_0047 + 31266940-31268394 29 3.1
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 28 5.4
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 9.4
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 27 9.4
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 27 9.4
02_05_0722 + 31220798-31220887,31220992-31221036,31221524-312215... 27 9.4
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 27 9.4
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 30.3 bits (65), Expect = 1.0
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Frame = +3
Query: 243 EADPCVCTFIYAPVCGTDGNTYPNKCSLECS-RPLAPSL-------EMKHRGECQEVKVA 398
+ D V +Y P GT P K S+E +P+ + EM + Q + +
Sbjct: 35 QGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLL 94
Query: 399 DIQPCICTREIKQVCGSDG-VTYGNPCLLNCATQSNPSLSIEH 524
+ P T I QV G+DG V++ LL+ S L EH
Sbjct: 95 TVHPNTTTSVILQVVGNDGSVSFCRNVLLSIV--SGCLLDYEH 135
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 47 YTRYISDRRCAN--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 214
Y ++S R AN ++N A+ RV+ +R + DLP L++REG + RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 409 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPS 293
G S TLTSW+S F + +G H ++G PS
Sbjct: 31 GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69
>03_06_0047 + 31266940-31268394
Length = 484
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 123 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 269
R + C D TY ++CE DK LK+ K ++ P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 427 SRVQIHGCISATLTSWHS 374
+RV+ H CIS+++ WHS
Sbjct: 296 ARVKKHACISSSIIGWHS 313
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 295 SVPQTGAYMKVQTQGSASSHVPS 227
S Q G+ M+ Q+QG ASS +PS
Sbjct: 1668 STVQNGSQMQQQSQGPASSAIPS 1690
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 409 GCISATLTSWHSPRCFISRDGANGREHSSE 320
GCI+ ++T H+ CF+ A+G + E
Sbjct: 305 GCIAISMTLHHTSLCFVCSHLASGEKEGDE 334
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 469 LP*VTPSLPQTCLISRVQIHGCISATLTSWHSPR 368
LP + P +P TCL R +H S+T T H+ +
Sbjct: 198 LPTLLPCVPDTCLTDRNLLHIRESSTKTVLHAAK 231
>02_05_0722 +
31220798-31220887,31220992-31221036,31221524-31221595,
31221743-31221871
Length = 111
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 427 SRVQIHGCISATLTSWHSPRCFISR 353
+R Q+HG ATL +H PR SR
Sbjct: 19 NRAQLHGRCRATLGGFHDPRSNSSR 43
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 298 PSVPQTGAYMKVQTQGSASSHVPSFTIFKSLCVLSLSQYKRHWL 167
PSVP+ + T S+ + + T+F + +SLS Y RH L
Sbjct: 291 PSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQISLSSYLRHSL 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,066,545
Number of Sequences: 37544
Number of extensions: 325452
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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