Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_C01
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.6  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   4.6  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   6.1  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   8.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.1  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.1  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 546 SPLHASSPGLPPAH 505
           SPLHA+S  LPP+H
Sbjct: 43  SPLHANSVSLPPSH 56


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 196 WMWNSFFYRSSNNGMCT 146
           WMWNSF   S  NG  T
Sbjct: 421 WMWNSFRGASDENGEVT 437


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 72  RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 158
           R+  CV ESI    ++ T  K+P T H+P
Sbjct: 31  RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 230 DIALIRLMVTAPYTDFVRPICLPSLDYTQQPPADFEMYVAGW 355
           D   + +       +FV P CL  + +T+     F ++VA W
Sbjct: 43  DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANW 84


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 284 PICLPSLDYTQQPPADFEMYVAGWGMYKQF--ISGTGLSSTVKQHVKLPYVDR 436
           P C  S  YT Q   +  +    WG+ + F    G      V + VK P V++
Sbjct: 58  PPCTFSRSYTDQKRKEIHLGSTEWGLKESFTLTRGPNRRGNVGKGVKRPMVNK 110


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 261 HRIQILYG-PSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNNTL 416
           H   +L G P V +   +RN   Q+L    P    TS   L+LV  V +N TL
Sbjct: 198 HEAVLLSGNPMVAQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTL 250


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 211 VGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQ----DCSSD 44
           +G  +  WN ++Y+  +N    +FG    ++     +I+  T +   S  +    + SSD
Sbjct: 253 LGFFVVFWNPYWYKMMDNPSWELFGRDQYIQCQALYLIIRLTCLYLLSCYESEILNLSSD 312

Query: 43  TVCSSEHVLR 14
           T   S+ +LR
Sbjct: 313 TNLESDFLLR 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,040
Number of Sequences: 5004
Number of extensions: 63896
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)