BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_C01 (581 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.0 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.6 SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 4.6 SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po... 25 6.1 SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|... 25 8.1 SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 8.1 SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.1 >SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccharomyces pombe|chr 2|||Manual Length = 1102 Score = 27.1 bits (57), Expect = 2.0 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = -3 Query: 546 SPLHASSPGLPPAH 505 SPLHA+S LPP+H Sbjct: 43 SPLHANSVSLPPSH 56 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 25.8 bits (54), Expect = 4.6 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -2 Query: 196 WMWNSFFYRSSNNGMCT 146 WMWNSF S NG T Sbjct: 421 WMWNSFRGASDENGEVT 437 >SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 654 Score = 25.8 bits (54), Expect = 4.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 72 RRRMCV*ESIIQQTMVRTA*KVPKTVHIP 158 R+ CV ESI ++ T K+P T H+P Sbjct: 31 RKSRCVVESIGNPCLLCTQLKIPCTYHLP 59 >SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 278 Score = 25.4 bits (53), Expect = 6.1 Identities = 11/42 (26%), Positives = 19/42 (45%) Frame = +2 Query: 230 DIALIRLMVTAPYTDFVRPICLPSLDYTQQPPADFEMYVAGW 355 D + + +FV P CL + +T+ F ++VA W Sbjct: 43 DCVFLEISELREIIEFVGPDCLRGIYFTEPISQCFVLHVANW 84 >SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 131 Score = 25.0 bits (52), Expect = 8.1 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Frame = +2 Query: 284 PICLPSLDYTQQPPADFEMYVAGWGMYKQF--ISGTGLSSTVKQHVKLPYVDR 436 P C S YT Q + + WG+ + F G V + VK P V++ Sbjct: 58 PPCTFSRSYTDQKRKEIHLGSTEWGLKESFTLTRGPNRRGNVGKGVKRPMVNK 110 >SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1010 Score = 25.0 bits (52), Expect = 8.1 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = +3 Query: 261 HRIQILYG-PSVYRLWIIRNNPRQILKCTSPVGECTSSSYLALVCRVQLNNTL 416 H +L G P V + +RN Q+L P TS L+LV V +N TL Sbjct: 198 HEAVLLSGNPMVAQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTL 250 >SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 615 Score = 25.0 bits (52), Expect = 8.1 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Frame = -2 Query: 211 VGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIVCCIILS*THILRRSFNQ----DCSSD 44 +G + WN ++Y+ +N +FG ++ +I+ T + S + + SSD Sbjct: 253 LGFFVVFWNPYWYKMMDNPSWELFGRDQYIQCQALYLIIRLTCLYLLSCYESEILNLSSD 312 Query: 43 TVCSSEHVLR 14 T S+ +LR Sbjct: 313 TNLESDFLLR 322 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,764,040 Number of Sequences: 5004 Number of extensions: 63896 Number of successful extensions: 173 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 173 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 250133048 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -