Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_C01
(581 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 1.3
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila... 29 1.7
At1g28520.1 68414.m03506 expressed protein 29 2.3
At5g59700.1 68418.m07484 protein kinase, putative similar to rec... 28 4.0
At1g05370.1 68414.m00544 expressed protein 28 4.0
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 28 5.2
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati... 27 6.9
At3g56410.2 68416.m06274 expressed protein 27 6.9
At3g56410.1 68416.m06273 expressed protein 27 6.9
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 6.9
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 6.9
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 27 9.1
At4g08370.1 68417.m01382 proline-rich extensin-like family prote... 27 9.1
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 564 HEGPPESPLHASSPGLPPAHSC 499
+ PP SP+H SSP PP+ C
Sbjct: 679 YHSPPPSPVHYSSPPPPPSAPC 700
>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 767
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -3
Query: 558 GPPESPLHASSPGLPPAHSCSL--VI--TSASPPRNVLCAA*HLSLSTYGSLTCCL 403
GP + LHA + PP+ S SL V+ +S R +L HLSLS + + + CL
Sbjct: 3 GPFKKILHAHNQRFPPSSSSSLDPVVDDSSRKQTRIILSYLLHLSLSLHITYSLCL 58
>At1g28520.1 68414.m03506 expressed protein
Length = 486
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 50 GAILIEGTPKNVRLGEYNTTNNGPDCMKGTKDCAHPVVTAPIEKTI 187
G + E P+N NTTNN C+KG + V T ++ T+
Sbjct: 419 GRLTAEFPPEN---NTTNTTNNNKRCIKGRPKVSTKVATGNVQNTV 461
>At5g59700.1 68418.m07484 protein kinase, putative similar to
receptor-like protein kinase [Catharanthus roseus]
gi|1644291|emb|CAA97692
Length = 829
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 345 SPVGECTSSSYLALVCRVQLNNTLNSHM----LIETDVKQRKGHCVGA 476
S +G C ++ + LV N TL SH+ L+ KQR C+G+
Sbjct: 540 SLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLSLSWKQRLEICIGS 587
>At1g05370.1 68414.m00544 expressed protein
Length = 439
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 333 LKCTSPVGECTSSSYLALVCRVQLNNTLNSHMLIETDVKQRK-GHCVGA 476
LK T +G C SS + V R L +T+ L TD K GH GA
Sbjct: 264 LKSTDKIGSCASSRFAFTVSRDGL-DTVKPWCLTLTDTSSTKLGHNTGA 311
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 137 TKDCAHPVVTAPIEKTIPHPDYIPNDVQGRHDIALI 244
TK C V TAPI KTI + Y D G+ D+ L+
Sbjct: 391 TKHCTRAVYTAPI-KTISNQKY--RDFCGKFDVGLL 423
>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
similar to pentacyclic triterpene synthase [gi:6650207]
[PMID: 11247608] Contains Pfam domain PF00432:
Prenyltransferase and squalene oxidase repeat
Length = 758
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 241 KRNVMSALHIVGDVIWMWNSFFYRSSNNGMCTVFGTFHAVRTIV 110
KR + A + D+ + S++ N G+C ++GTF AVR +V
Sbjct: 586 KRFITKAAKYIEDMQTVDGSWY---GNWGVCFIYGTFFAVRGLV 626
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 560 RVHRSRPCTRLHRVYHPHTV 501
R + SRP T + R YHP TV
Sbjct: 142 REYNSRPSTSVERGYHPETV 161
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 560 RVHRSRPCTRLHRVYHPHTV 501
R + SRP T + R YHP TV
Sbjct: 95 REYNSRPSTSVERGYHPETV 114
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = -3
Query: 567 IHEGPPESPLHASSPGL----PPAHSCSLVITSASPP 469
+H PP P+H+ P + PP HS + S PP
Sbjct: 644 VHSPPPPPPVHSPPPPVFSPPPPMHSPPPPVYSPPPP 680
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 573 HFIHEGPPESPLHASSPGLPPAHSCSLVITSASPPR 466
H +H PP S S P PP HS + PP+
Sbjct: 442 HVVHSPPPAS----SPPTSPPVHSTPSPVHKPQPPK 473
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 567 IHEGPPESPLHASSPGLPPAHSCSLVITSASPP 469
+H PP SP+H SP PP +S SPP
Sbjct: 498 VHSPPPPSPIH--SPPPPPVYSPPPPPPVYSPP 528
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 555 PPESPLHASSPGLPPAHSCSLVITSASPP 469
PP P+++ P PP HS + S PP
Sbjct: 550 PPPPPVYSPPPPPPPVHSPPPPVFSPPPP 578
>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 350
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/81 (28%), Positives = 30/81 (37%)
Frame = -3
Query: 570 FIHEGPPESPLHASSPGLPPAHSCSLVITSASPPRNVLCAA*HLSLSTYGSLTCCLTVLD 391
++++ PP SP SSP PP V S PP + + Y S V
Sbjct: 50 YVYKSPPPSPYLYSSPPPPP-----YVYNSPPPPPPYIYNSPPRPPYVYKSPPPPPFVYS 104
Query: 390 KPVPDMNCLYIPQPATYISKS 328
P P P P Y+ KS
Sbjct: 105 SPPPPTYIYNSPPPPPYVYKS 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,738,402
Number of Sequences: 28952
Number of extensions: 353951
Number of successful extensions: 1145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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