Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B24
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 81 1e-16
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 37 0.002
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 28 0.73
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 26 2.9
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 26 3.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 5.1
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 5.1
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 25 5.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 6.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 9.0
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 81.0 bits (191), Expect = 1e-16
Identities = 36/72 (50%), Positives = 51/72 (70%)
Frame = +1
Query: 1 GDKNQVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQ 180
G+ V APM GT++ I+VKEG KV+KG IAVLSAMKME+++ AP +G++KS+ + G
Sbjct: 1112 GNPGHVAAPMSGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQGD 1171
Query: 181 KLEGDDLICTIE 216
+ G DL +E
Sbjct: 1172 SVNGGDLCAVLE 1183
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +1
Query: 4 DKNQVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQK 183
D Q+ P PG ++ V+ G+ ++ G+ A + MKM M + A G+V+ + G
Sbjct: 709 DPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIK-QPGAS 767
Query: 184 LEGDDLI 204
L+ D++
Sbjct: 768 LDAGDIL 774
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 72 SGERSADSRPLGHEDGDDRSGPKSWARQVSRHH 170
S ++AD+ +G D + + PKSWA ++R+H
Sbjct: 241 SNSKNADA--IGASDANVATAPKSWADLIARNH 271
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 2.9
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 16 VGAPMPGTVLTIKVKEGDKVEKGQPIAVL--SAMKMEMIVQAPRAGLVKSVD 165
V AP G + VKEGD + Q IAV+ SA E P+ VK+ D
Sbjct: 88 VTAPDAGVLKEQLVKEGDTITIDQDIAVIDTSAAPPEGGSAGPKKDEVKTAD 139
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 243 VTPCTCMNSFDGTNEVVPLEFLTVGDVD*LDEPS-SWGLNDHL 118
+TP + + F+ T + P EF+ GD P+ SW D +
Sbjct: 16 ITPASKTSDFENTGMISPEEFVLAGDYLVSKFPTWSWECGDRI 58
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 146 GSSSQSTSPTVRNSRGTTSFVPSN 217
G ST+P N+ GT+ FV SN
Sbjct: 148 GLFGSSTTPATTNAFGTSGFVSSN 171
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 383 RHHSPNTHRTVL--ILQLYIKNIFFFYYIVFFSESYLHALMILLALIS 246
RH P +V+ I L + IF+ YI F + SY+ + +IL A ++
Sbjct: 11 RHLLPYIEHSVIPIIALLVLSLIFYILYICFGTTSYILSGIILGAYVN 58
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -3
Query: 350 LILQLYIKNIFFFYYIVFFSESYLHALMILLALISKS 240
+++ L I +FFF+++ F++ Y ++ L L++ S
Sbjct: 7 IVIGLLICVLFFFFFVSRFNDKYELQPLLTLGLLNAS 43
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +1
Query: 13 QVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSV 162
Q AP+ T TIK K P V SA + P A + +V
Sbjct: 1039 QAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNV 1088
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 320 FFFYYIVFFSESYLHALMILLALISKSPPVH 228
FF+Y+ + + LH L++L +I+ + V+
Sbjct: 303 FFYYFAISLAYMVLHTLVLLYQIITLNVTVN 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,286
Number of Sequences: 5004
Number of extensions: 36094
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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