Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B24
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 66 2e-11
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494... 39 0.002
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 35 0.034
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 34 0.079
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 33 0.14
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 33 0.14
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 31 0.55
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 29 3.0
05_04_0144 + 18389877-18390431 28 3.9
07_03_1598 + 28019788-28019834,28020404-28021289 28 5.2
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 5.2
07_03_1411 + 26379556-26379620,26379883-26379940,26380057-263802... 27 6.8
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 27 6.8
>12_02_1039 +
25610200-25610538,25611022-25611143,25611243-25611390,
25611681-25611818,25612106-25612165,25612234-25612392,
25612714-25612912,25613156-25613260,25613339-25613475,
25613812-25614037,25614119-25614282,25614408-25614524,
25614622-25614864,25614959-25615054,25615270-25615287
Length = 756
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/70 (42%), Positives = 48/70 (68%)
Frame = +1
Query: 7 KNQVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQKL 186
K V APM G V+ + +K+G +VE+GQP+ V+ AMKME +V+AP AG V+ + T GQ++
Sbjct: 682 KGSVLAPMAGLVVKVLLKDGARVEEGQPVMVMEAMKMEHVVKAPCAGYVEGLKATAGQQV 741
Query: 187 EGDDLICTIE 216
++ T++
Sbjct: 742 FDSSVLFTVK 751
>02_03_0404 +
18648632-18648669,18649319-18649379,18649449-18649476,
18649787-18649861,18649929-18649984,18650085-18650129,
18650224-18650475,18650586-18650680,18651114-18651204,
18651356-18651466,18651556-18651750,18651827-18652018
Length = 412
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 34 GTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNG 177
GT+ T K GD+VE +PIA + K+ M V +P AG+++ + G
Sbjct: 60 GTLATFLKKPGDRVEADEPIAQIETDKVTMDVASPEAGIIEKFVASEG 107
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 35.1 bits (77), Expect = 0.034
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 34 GTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNG 177
GT+ K GD+VE +PIA + K+ + V +P AG+++ + G
Sbjct: 88 GTLANFLKKPGDRVEADEPIAQIETDKVTIDVASPEAGVIEKFIASEG 135
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 33.9 bits (74), Expect = 0.079
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 34 GTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQ 180
G +++ EGD+V KG P+ V+ + K +M V+ G+V V + G+
Sbjct: 56 GRIVSWTAAEGDRVAKGDPVVVVESDKADMDVETFYDGIVAVVLVPAGE 104
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 34 GTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQ 180
G +++ EGD++ KG P+ V+ + K +M V+ G + +V + G+
Sbjct: 64 GKIVSWTASEGDRLAKGDPVVVVESDKADMDVETFHDGFLAAVLVPAGE 112
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 34 GTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQ 180
G +++ EGD+V KG + V+ + K +M V+ G+V +V + G+
Sbjct: 61 GKIVSWSAAEGDRVAKGDAVVVVESDKADMDVETFHDGIVAAVLVPAGE 109
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 31.1 bits (67), Expect = 0.55
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 9 EPSGCSDAGNSTYYQSKGR**SGERSADSRPLGHEDGD---DRSGP--KSWARQVSRHHQ 173
E G S+ G S ++ KG+ +RSA RP+G DG+ DRS K +V+ +
Sbjct: 492 EEDGSSELGVSQWHM-KGK--RNQRSALKRPMGKTDGNISLDRSNSSLKGSLYRVNESNP 548
Query: 174 RSETRGGRPHLYHRMNSY 227
E+ G H Y + Y
Sbjct: 549 NMESTGASSHQYFGRSFY 566
>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 72 SGERSADSRPLGHEDGDDRSGPKSWARQVSRHHQRSETRGGR 197
S + +P DG+ R S ARQVSR R TR GR
Sbjct: 1123 SERNTRQEKPNNTHDGN-RLSSNSGARQVSRDRYRESTRKGR 1163
>05_04_0144 + 18389877-18390431
Length = 184
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 81 RSADSRPLGHEDGDDRSGPKSWARQVSRHHQRSETRGG 194
R A R GH GD G + W R V R + RGG
Sbjct: 86 RPARQREGGHGAGDVEGGGRRWWRGVMNPVARRDRRGG 123
>07_03_1598 + 28019788-28019834,28020404-28021289
Length = 310
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 16 VGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAP-RAGLV 153
+GAP P ++ + + E D+V ++L+ +K V AP RAG +
Sbjct: 131 IGAPAPASLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCI 177
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 140 ELGSSSQSTSPTVRNSRGTTSFVPSNEFIHVQGVTLKSMPIIS*ERVNMI 289
E GS+ + T+ T N + + S + +IHV+ T+ + ++ R+N++
Sbjct: 266 EHGSARRRTADTALNKQSSRSHSVFSIYIHVKETTVGNQELLKCGRLNLV 315
>07_03_1411 +
26379556-26379620,26379883-26379940,26380057-26380200,
26380367-26380426,26380789-26380956,26381043-26381117
Length = 189
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 374 NDDVTRARARQLIILPTLLTGSSTSPKWLPVFVDTL 481
++ + + R L LP +L + +PKWL + TL
Sbjct: 94 HESIAPFKERVLYSLPVVLVAADCNPKWLTKHIPTL 129
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 90 DSRPLGHEDGDDRSGPKSWARQVSRHHQRSETRGGR 197
DS LGH +D SG S Q +R H RS+ + R
Sbjct: 294 DSDELGHPVKEDLSGNDSDRGQQTRRHGRSQWKRSR 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,592,539
Number of Sequences: 37544
Number of extensions: 234076
Number of successful extensions: 627
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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