Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B24
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   8e-13
SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0)              53   2e-07
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_13355| Best HMM Match : HlyD (HMM E-Value=0.29)                     32   0.33 
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                31   0.75 
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 28   4.0  
SB_50833| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.1e-08)       27   7.0  
SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1058

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 36/72 (50%), Positives = 48/72 (66%)
 Frame = +1

Query: 1    GDKNQVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQ 180
            G K  VGAPMPG V+ ++VKE + V+KG P+ VLSAMKME  V AP  G+VK + ++   
Sbjct: 984  GVKGSVGAPMPGKVVGVRVKENEVVKKGMPLVVLSAMKMETNVSAPIDGIVKKISVSLNS 1043

Query: 181  KLEGDDLICTIE 216
             +E  DL+  IE
Sbjct: 1044 NVEAGDLLIDIE 1055


>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 33/70 (47%), Positives = 44/70 (62%)
 Frame = +1

Query: 7    KNQVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQKL 186
            K  VGAPMPG V+ ++VKE + V+KG  + VLSAMKME  V AP  G VK + ++    L
Sbjct: 1048 KGSVGAPMPGKVVAVRVKENEVVKKGTSLVVLSAMKMETNVSAPIDGRVKKISVSQNMSL 1107

Query: 187  EGDDLICTIE 216
               DL+  +E
Sbjct: 1108 NAGDLLVELE 1117


>SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0)
          Length = 945

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/47 (44%), Positives = 35/47 (74%)
 Frame = +1

Query: 22   APMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSV 162
            APMPG ++ + V+ G +VE+GQ + V+ AMKME  +++P+AG++  V
Sbjct: 870  APMPGNIVKVLVEPGQEVEQGQVLVVMEAMKMEHSIRSPKAGVIDRV 916


>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/65 (36%), Positives = 39/65 (60%)
 Frame = +1

Query: 22  APMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQKLEGDDL 201
           +PMPG V+++ V  GD+V +GQ +AV+ AMKM+  + +   G V  V+   G  +   D+
Sbjct: 486 SPMPGKVVSVAVVVGDEVREGQELAVVEAMKMQNSLHSATTGKVIKVNYKAGDNVAEGDI 545

Query: 202 ICTIE 216
           +  IE
Sbjct: 546 MVQIE 550


>SB_13355| Best HMM Match : HlyD (HMM E-Value=0.29)
          Length = 327

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 34  GTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQKLE 189
           G V  I V+ GD V KGQP+  L     E+        +++ ++  N  KL+
Sbjct: 79  GAVQEIYVENGDLVTKGQPLVRLYNPNTELTYMQQETSIIEQINNLNKAKLD 130


>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 34  GTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQK-LEGDDLICT 210
           GT+++ + +EGD++ +G  +A +   K  M  + P  G +  + I  G K +    L+C 
Sbjct: 84  GTLVSWEKQEGDELAEGDLLAQIETDKATMEFETPEEGFIAKILIPAGSKDVPIGKLLCI 143

Query: 211 I 213
           I
Sbjct: 144 I 144


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 34  GTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQKLEGDD 198
           GT+++   KEGD +E G  +  +   K  + +     G++  + I  G   E +D
Sbjct: 4   GTIVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKIVIPPGTSDEAED 58


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 16  VGAPMPGTVLTIKVKEGDKVEKGQPI 93
           V AP  G +  + V +GDKVEKGQ +
Sbjct: 92  VTAPANGVIEELFVADGDKVEKGQQL 117


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 356 CDAYSANDDVTRARARQLIILPT-LLTGSSTSPKWLPVFVDTLIE 487
           C A   +D V R R+R+LII+ T +LT   T   + P F+ T IE
Sbjct: 716 CGAGETSDSVARVRSRRLIIMNTEVLTTVITIRAFAP-FLCTTIE 759


>SB_50833| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.1e-08)
          Length = 280

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 46  TIKVKEG-DKVEKGQPIAVLSAMKMEMIVQAPRAGLVKSVDITNGQK 183
           TIK+  G DK  K  P+ VL    +++ V   +AGL+ +VD+T   +
Sbjct: 193 TIKIFCGTDKSRK--PLTVLIMSNIKISVSEKQAGLLSTVDVTTNHE 237


>SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 137 QELGSSSQSTSPTVRNSRGTTSFVPSNEFIHVQGVT 244
           Q+  +  +++SP+ R+    +S V +NEF+H + ++
Sbjct: 33  QDQDTLDETSSPSSRSRIQASSLVKTNEFLHARDIS 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,527,546
Number of Sequences: 59808
Number of extensions: 279583
Number of successful extensions: 663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)