Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B23
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    28   1.1  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    27   2.4  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   3.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   7.4  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 250 VPGADTDHFANGGRFQIGHE-EVVYHR 173
           +PG  T HF NG +F+I  E E +Y++
Sbjct: 374 IPGMSTSHFENGLQFEIDDEMEPLYNQ 400


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +2

Query: 89  EFYKVLQGLCKQTGEFKDECLHLAE----QYYPVIYNFLVADLKPAAI 220
           EF++ L  L K     KD C + AE      Y  +  F+  DLKP  I
Sbjct: 239 EFFRALHSLPKHILPEKDACFYAAEVTAALEYLHLMGFIYRDLKPENI 286


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 75  TQLSLSSTR-CCKVFASKPVNSKTN 146
           +++ +++ R CC+VFA  P+  KTN
Sbjct: 493 SEIRIAAARTCCQVFARDPICRKTN 517


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 62  VLIANTTELEFYKVLQGLCKQTGE 133
           VL+A TTE  F K +  L  +TG+
Sbjct: 828 VLLAPTTETSFLKEISNLLDRTGD 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,085
Number of Sequences: 5004
Number of extensions: 40679
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)