Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B23
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59... 50 1e-06
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342... 48 5e-06
05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220... 47 1e-05
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 46 2e-05
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 37 0.012
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 36 0.016
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 35 0.050
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 34 0.087
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 31 0.81
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 30 1.4
11_06_0596 + 25385744-25388890 28 4.3
12_01_0200 - 1483266-1483956,1484023-1484134,1484659-1484957,148... 28 5.7
06_03_0954 - 26281937-26282143,26282232-26282286,26282430-262824... 27 10.0
06_02_0315 - 14230234-14232771 27 10.0
>11_01_0075 +
591537-591618,592410-592648,592840-593037,593129-593188,
593313-593456,594655-594819,595611-595709,596057-596125,
596216-596312,596922-597013,597085-597255,598053-598184,
598479-598559,599131-599247,599344-599433
Length = 611
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +2
Query: 23 CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
C CE + + + L + + +L C QT F+ +CL + Y +++ +A+
Sbjct: 67 CSACENITSEAVNFLSEKQIQDKIRTILHDTCSQTFSFEQKCLETMDSYATLVF-AKIAE 125
Query: 203 LKPAAICKMIGIC 241
+KPAA CK G+C
Sbjct: 126 IKPAAFCKQYGLC 138
>01_01_0462 +
3422352-3422439,3423057-3423241,3423333-3423530,
3423617-3423676,3424022-3424171
Length = 226
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 23 CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
C+ CEQ T L N T+ E +L C G K +C+ L + Y P+ + V+
Sbjct: 51 CQLCEQYSTEALFYLQQNETQTEILSILHHACANVGPLKQQCITLVDYYIPLFF-LEVSM 109
Query: 203 LKPAAICKMIGIC 241
+ P C+ + +C
Sbjct: 110 VTPEKFCESVHLC 122
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/73 (19%), Positives = 29/73 (39%)
Frame = +2
Query: 23 CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
C C ++ + +L +LE ++ C + + +C + +Y P+I
Sbjct: 137 CGICHHVLVEVLIMLKDPDMQLEIVEIFLKACSKADNYVQQCKKMVLEYTPLILVKSQKF 196
Query: 203 LKPAAICKMIGIC 241
L+ +C I C
Sbjct: 197 LETTDVCSTIHAC 209
>05_03_0566 -
15521494-15521511,15521550-15521747,15521856-15522037,
15522643-15522721
Length = 158
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +2
Query: 23 CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
C+ CE+ T L N T++E L C + FK EC L + YY ++ V
Sbjct: 47 CQICEEFATEALFYLNENETQVEIIATLHQACSKFPSFKLECTKLVD-YYVSLFFTKVTS 105
Query: 203 LKPAAICKMIGIC 241
L P C+ + +C
Sbjct: 106 LSPEEFCESVSLC 118
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +2
Query: 23 CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
C CE + + + L + + +L C QT F+ +CL + Y +++ +A+
Sbjct: 67 CSACENITSEAVNFLSEKQIQDKIMTILHDTCSQTFSFEQKCLETMDSYATLVF-AKIAE 125
Query: 203 LKPAAICKMIGIC 241
+KP CK G+C
Sbjct: 126 IKPDEFCKQYGLC 138
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 125 TGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGNAT 256
TG EC + QY I + L A+ KPA +C +G+C + T
Sbjct: 323 TGVVSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLCTFDGT 366
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 125 TGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 241
TG EC + QY I + L+A+ +P+ IC +G+C
Sbjct: 313 TGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 34.7 bits (76), Expect = 0.050
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 128 GEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 241
G EC + +Y +I N L+A P +C +G+C
Sbjct: 306 GIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLC 343
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 33.9 bits (74), Expect = 0.087
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 143 ECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGNAT 256
EC + Y +I L+A P +C IG+CA + T
Sbjct: 310 ECKQVVRDYGDMILEMLIAQASPMKLCSQIGLCAFDGT 347
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 120 LQRPCNTL*NSSSVVLAISTSRRCVTSCSQNSHGTSS 10
+QRP N+L N S L IST++ S S+N+ +SS
Sbjct: 110 MQRPYNSLLNLSLKPLCISTAKPATASSSRNNGASSS 146
>01_06_1670 - 39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 89 EFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGI 238
+F VL +CK+ G D + + +++PV N ++ L P GI
Sbjct: 898 DFLSVLDQVCKEVGRINDRTIASSVRHFPVPVNPMMPQLFPRIHALRAGI 947
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 148 TFVFEFTGLLAKTLQHLVELKLSCVGDQYVT 56
T V F L K+L+HL+ ++ C+GD VT
Sbjct: 741 TRVCVFESTLPKSLKHLLAGRVDCLGDDAVT 771
>12_01_0200 -
1483266-1483956,1484023-1484134,1484659-1484957,
1485203-1485265,1485721-1486010
Length = 484
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 343 GFLSSDQFGRWCDGFDDEFLGQERRHRYVGCV 248
G L+ FGR DGFDD+ L +R R CV
Sbjct: 276 GSLAHKLFGR--DGFDDDVLDWNQRFRIALCV 305
>06_03_0954 -
26281937-26282143,26282232-26282286,26282430-26282482,
26282587-26282663,26282734-26282857,26282947-26283072,
26283463-26283616,26283709-26283817,26283911-26283974,
26284782-26284898
Length = 361
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 147 HSSLNSPVCLQRPCNTL*NSSSVVLAISTSRRCVTSCSQNSHGTS 13
HS P C C + +S +V+A + RCV S + ++ S
Sbjct: 151 HSDFAGPTCGSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLS 195
>06_02_0315 - 14230234-14232771
Length = 845
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/62 (25%), Positives = 24/62 (38%)
Frame = -2
Query: 414 GSGSASPITRTFVCFXXXXXXXXXXXXAPISLEDGVMALMMSSLGRSGDTGTSVAFPAQI 235
G G T F+CF AP +L + ++S GR+G +VA
Sbjct: 10 GGGGGGGGTELFICFTSRPSTASASSGAPATLRPSSSSKLLSP-GRTGGGAGAVAGADSA 68
Query: 234 PI 229
P+
Sbjct: 69 PV 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,973
Number of Sequences: 37544
Number of extensions: 291016
Number of successful extensions: 873
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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