Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B23
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)                      49   2e-06
SB_10103| Best HMM Match : SapB_2 (HMM E-Value=2.6e-12)                40   0.001
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_52221| Best HMM Match : SapB_2 (HMM E-Value=0.00013)                33   0.12 
SB_15989| Best HMM Match : SapB_2 (HMM E-Value=0.00013)                33   0.12 
SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)                32   0.36 
SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)                   28   4.4  
SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      28   5.8  
SB_27570| Best HMM Match : DNA_ligase_A_C (HMM E-Value=2.3)            28   5.8  

>SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)
          Length = 457

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +2

Query: 23  CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQT-GEFKDECLHLAEQYYPVIYNFLVA 199
           CE C  ++T+L+  L  N T+ E    L+ +C     +   EC  +  +Y   +   ++A
Sbjct: 315 CEICTTVMTYLKAFLNNNATDEEIVNFLEKVCNYLPSQIASECNAIVSEYGSTVLQ-IIA 373

Query: 200 DLKPAAICKMIGICAGNATDVPVSPLLPKELI 295
           +  P  +CK IG+C+ N   V  + +L K ++
Sbjct: 374 NTDPTTLCKEIGLCSAN-QHVMKAKILSKHIL 404



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +2

Query: 23  CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCK-QTGEFKDECLHLAEQYYPVIYNFLVA 199
           C  CE ++  L D+L  N+T+ E  + ++ +C       K +C    ++Y P +   L  
Sbjct: 219 CVLCEFVMKELDDMLSKNSTQQEIIQAVEKVCSILPSTIKSKCDQFVQEYGPALIEILEQ 278

Query: 200 DLKPAAICKMIGICA 244
           ++ P  +C  +G+CA
Sbjct: 279 EVSPKLVCTTLGLCA 293



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +2

Query: 23  CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
           C  C++LV  +  +    T + +   +++  C   G    EC  L E Y   I   +++ 
Sbjct: 25  CTTCKELVKTIYTMASDPTAQNQILSLIKDACTFLGPEASECKSLVETYGKAIIQLILSQ 84

Query: 203 L-KPAAICKMIGIC 241
           L  P  +CK IG+C
Sbjct: 85  LSNPDQVCKEIGLC 98


>SB_10103| Best HMM Match : SapB_2 (HMM E-Value=2.6e-12)
          Length = 105

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +2

Query: 23  CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
           C  C++LV  +  +    T + +   +++  C   G    EC  L E Y   I   +++ 
Sbjct: 13  CTTCKELVKTIYTMASDPTAQNQILSLIKDACTFLGPEASECRSLVETYGKAIIQLILSQ 72

Query: 203 L-KPAAICKMIGIC 241
           L  P  +CK IG+C
Sbjct: 73  LSNPDQVCKEIGLC 86


>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 101 VLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC-AGNAT 256
           V++ L K   E   +C    ++Y P I   L  + KP  +C+ + +C AG AT
Sbjct: 611 VMRELSKMLNENSTKCKTFVQEYTPFIIEILSKEFKPELVCRELKLCSAGGAT 663


>SB_52221| Best HMM Match : SapB_2 (HMM E-Value=0.00013)
          Length = 290

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 92  FYKVLQGLCK--QTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 241
           F K    LCK   T  +++ CL L + Y P I + +  D+    IC  I +C
Sbjct: 60  FVKSFDRLCKLLPTKIYQNACLSLGKYYIPKIIDIITDDVTADVICHAIDLC 111


>SB_15989| Best HMM Match : SapB_2 (HMM E-Value=0.00013)
          Length = 524

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 92  FYKVLQGLCK--QTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 241
           F K    LCK   T  +++ CL L + Y P I + +  D+    IC  I +C
Sbjct: 60  FVKSFDRLCKLLPTKIYQNACLSLGKYYIPKIIDIITDDVTADVICHAIDLC 111


>SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)
          Length = 175

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 89  EFYKVLQGLCKQT-GEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGN 250
           E    L+ +C     +   EC  +  +Y   +   ++A+  P  +CK IG+C+ N
Sbjct: 2   EIVNFLEKVCNYLPSQIASECNAIVSEYGSTVLQ-IIANTDPTTLCKEIGLCSAN 55


>SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
 Frame = -1

Query: 553 VTFASTSRVAEFNLQVVQEVLAERADHLVLWDRDE-HSLDG*CGYDSRFGFRFTDHADIR 377
           VTFA+ +      L+   E+L++RA H+   D     SL     + +  GF F       
Sbjct: 24  VTFAAPTNA----LEPRGELLSKRARHVKRRDAITCTSLPLLLFHLASRGFDFLSRISDD 79

Query: 376 LLLSDGHTCYLGFLSSDQFGRWCDGFDDEFLGQERRHRYVGCVPGADTD 230
            ++  G   Y G+ S D    + D  DD+ +G +    YVG V G D+D
Sbjct: 80  DVVIIGDDNYFGYGSDDDSSVFADDSDDDGVGDD--SGYVGVVFGEDSD 126


>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 115 KTLQHLVELKLSCVGDQYVTEMCYQLLAEFARYIFCSC 2
           K    L +LK +C    YV  MC  L A+  R + C+C
Sbjct: 289 KPTMQLPKLKCAC---GYVRSMCVLLCAQCRRVVMCAC 323


>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +2

Query: 35  EQLVTHLRDVLIANTTELEFYKVLQGLCKQ---TG-EFKDECLHLAEQYYPVIYNFLVAD 202
           + L+  +R +L  +  + + +K L G  +Q   TG E+  EC+HL +  +  ++  LV D
Sbjct: 534 QALIETIRALLGNDKDKFQQFKTLSGTFRQGLCTGQEYYAECMHLFDHNFTQVFTELV-D 592

Query: 203 LKP 211
           L P
Sbjct: 593 LLP 595


>SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)
          Length = 570

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
 Frame = +2

Query: 2   ATTEDVPCEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVI 181
           A ++D   EF E L   +  ++ ANT      K L    KQT +   +C   A     + 
Sbjct: 139 AKSKDSLVEFKEYLWFFMEPIIAANTGNAGLIKKLLENIKQTEDV--QCPENATANEAI- 195

Query: 182 YNFLVADLKPAAIC-KMIGICAGNATDVPVSPLLPKELI--IKAITPSSK 322
             + + DL    +  K  G+    + + P++PLLPK++    K  TP++K
Sbjct: 196 --YALCDLAYGLVLNKATGLV---SEEFPLNPLLPKKMFQPSKRATPNNK 240


>SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 240 QIPIILQMAAGFRSATRKLYITG*YCSAKCRHSSLNSPVCLQR 112
           Q+  ++       S TR  ++ G    + CRH+SL   V LQR
Sbjct: 98  QVRTLIAHTYSTTSTTRTRFVVGDPLESTCRHASLALAVVLQR 140


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -3

Query: 197 PRGSCISQGNTVRLNVDIRL*IHRFACKDLATPCRTQAQLCWRSVRHGDVLPVARRIRTV 18
           P    +S  +T R +VD+       AC     P R    +C+ S  H DV P+    R V
Sbjct: 821 PHRVLMSMYSTSRAHVDV----FPMACSCRCVPHRVLMSMCFSSRSHVDVFPIVCSCRCV 876


>SB_27570| Best HMM Match : DNA_ligase_A_C (HMM E-Value=2.3)
          Length = 270

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 409 GFRFTDHADIRLLLSDGHTCYLGFLSSDQ 323
           GF FT   DI+ L+SD +T    F+SS Q
Sbjct: 159 GFVFTKQEDIKNLISDNYTTIPLFMSSVQ 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,711,605
Number of Sequences: 59808
Number of extensions: 336521
Number of successful extensions: 1147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)