Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B23
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.89 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 444  RSMGSAGTIPGSGSASP 394
            RS+GSA  IP SGS  P
Sbjct: 1843 RSVGSARNIPVSGSPEP 1859


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 142 VFEFTGLLAKTLQHLVELKLSCVGDQYVTEMCYQL 38
           VF  T L  KTL + V L + CVG  +++ + + L
Sbjct: 227 VFNIT-LRRKTLFYTVNLIIPCVGISFLSVLVFYL 260


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 115 KTLQHLVELKLSCVGDQYVTEMCYQLLAEFARYI-FCS 5
           KTL + V L + CVG  ++T + + L ++    +  CS
Sbjct: 248 KTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSLCS 285


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 124 LLAKTLQHLVELKLSCVGDQYVTEMCYQLLAE 29
           L  KTL + V L + CV   Y++ + + L A+
Sbjct: 231 LRRKTLFYTVNLIVPCVSISYLSVLAFYLPAD 262


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 115 KTLQHLVELKLSCVGDQYVTEMCYQL 38
           KTL + V L + C+G  ++T + + L
Sbjct: 239 KTLFYTVNLIIPCMGISFLTVLVFYL 264


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 115 KTLQHLVELKLSCVGDQYVTEMCYQL 38
           KTL + V + + C+G  ++T + + L
Sbjct: 243 KTLFYTVNIIIPCMGISFLTVLTFYL 268


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 115 KTLQHLVELKLSCVGDQYVTEMCYQL 38
           KTL + V + + C+G  ++T + + L
Sbjct: 243 KTLFYTVNIIIPCMGISFLTVLTFYL 268


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 411 NRESYPHYPSS 443
           N E+YPHY  S
Sbjct: 78  NEENYPHYQMS 88


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 501 RKYWQNEQTTLFCGTETN 448
           R+ W+  Q TL+ GT ++
Sbjct: 43  RRRWKQYQDTLYSGTRSS 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,471
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)