Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B23
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51730.1 68416.m05672 saposin B domain-containing protein con...    48   6e-06
At5g01800.1 68418.m00099 saposin B domain-containing protein con...    46   2e-05
At1g62290.1 68414.m07027 aspartyl protease family protein contai...    38   0.006
At1g11910.1 68414.m01374 aspartyl protease family protein contai...    36   0.018
At4g04460.1 68417.m00648 aspartyl protease family protein contai...    35   0.042
At5g46875.1 68418.m05776 hypothetical protein                          28   3.6  
At1g30100.1 68414.m03679 9-cis-epoxycarotenoid dioxygenase, puta...    27   6.3  
At5g54180.1 68418.m06746 mitochondrial transcription termination...    27   8.3  

>At3g51730.1 68416.m05672 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 213

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +2

Query: 11  EDVPCEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNF 190
           EDV C  CE+ VT     L  N T+ E  + L   C Q   +  +C+ L + Y P+ +  
Sbjct: 37  EDV-CTLCEEYVTDALSYLEKNVTQAEIIEDLHDRCSQLRGYSQQCISLVDYYVPLFF-L 94

Query: 191 LVADLKPAAICKMIGIC 241
            +   +P   CK + +C
Sbjct: 95  QLESFQPHYFCKRMNLC 111



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = +2

Query: 23  CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
           C  C + V+ +   L    T+L+  ++L   CK    ++ +C  L  +Y P+I       
Sbjct: 126 CGVCHRTVSEILIKLQDPDTQLDIVELLIKGCKSLKNYEKKCKTLVFEYGPLILVNAEEF 185

Query: 203 LKPAAICKMIGIC 241
           L    +C ++  C
Sbjct: 186 LVKNDVCTLLRAC 198


>At5g01800.1 68418.m00099 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 217

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 40/78 (51%)
 Frame = +2

Query: 23  CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
           CE C + V+ +   L    T+L+  ++L   CK    ++D+C  +  +Y P++   L   
Sbjct: 126 CEACRETVSEVVTKLKDPETKLKIIRLLLKECKSLNNYQDKCKKMVFEYGPLMLTDLQKF 185

Query: 203 LKPAAICKMIGICAGNAT 256
           L+   +C ++ +C G AT
Sbjct: 186 LEKKDVCTILHVCPGPAT 203



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +2

Query: 23  CEFCEQLVTHLRDVLIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVAD 202
           CE C++ VT + D L     + E  + L   C Q    K +CL + + Y  + +   V+ 
Sbjct: 39  CELCDKYVTLVIDYLQDYDNQNELVEALHISCSQIPPLKKQCLSMVDHYTQLFFT-QVST 97

Query: 203 LKPAAICKMIGIC 241
           +K   ICK + +C
Sbjct: 98  IKSDQICKRLNLC 110


>At1g62290.1 68414.m07027 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 513

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 125 TGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGNAT 256
           +G    +C  + +QY   I + L+A+ +P  IC  IG+CA + T
Sbjct: 317 SGVVSQQCKTVVDQYGQTILDLLLAETQPKKICSQIGLCAYDGT 360


>At1g11910.1 68414.m01374 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 506

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 20  PCEFCEQLVTHLRDV---LIANTTELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNF 190
           P  FCE   + + D    L+A  T +    ++       G    +C  + +QY   I + 
Sbjct: 274 PTGFCESGCSAIADSGTSLLAGPTTI--ITMINHAIGAAGVVSQQCKTVVDQYGQTILDL 331

Query: 191 LVADLKPAAICKMIGICAGNAT 256
           L+++ +P  IC  IG+C  + T
Sbjct: 332 LLSETQPKKICSQIGLCTFDGT 353


>At4g04460.1 68417.m00648 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 508

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 143 ECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGNAT 256
           EC  + +QY   + N L+A   P  +C  IG+CA + T
Sbjct: 321 ECKAVVDQYGKTMLNSLLAQEDPKKVCSQIGVCAYDGT 358


>At5g46875.1 68418.m05776 hypothetical protein
          Length = 132

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 343 GFLSSDQFGRWCDGFD 296
           G +  D  GRWCDGFD
Sbjct: 60  GGVLQDSKGRWCDGFD 75


>At1g30100.1 68414.m03679 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GI:6715257 from
           [Phaseolus vulgaris]
          Length = 589

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 369 RSKRMSA*SVKRNPNRESYPHYPS 440
           R +++SA SV   PN  ++P+YPS
Sbjct: 40  RRRKLSANSVSDTPNLLNFPNYPS 63


>At5g54180.1 68418.m06746 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 500

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 430 CGYDSRFGFRFTDHADIRLLLSDGHTCY-LGFL 335
           CG+DS   F+F   A + L LS+ +  + LGFL
Sbjct: 333 CGFDSPGMFKFLSKAPLILALSENNLSHKLGFL 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,292,671
Number of Sequences: 28952
Number of extensions: 225423
Number of successful extensions: 668
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)