Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B22
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    24   4.3  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    23   7.5  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    23   9.9  

>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 98  NCFITMLYRTFYDCLTKVFL 39
           +C +T+LY T  DC    FL
Sbjct: 101 SCILTILYSTTKDCTALQFL 120


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 116 HT*PQYNCFITMLYRTFYDCLTKVFLFDISS 24
           H  P  NCF         DC ++V+L +++S
Sbjct: 318 HFQPLENCFEIFGVDFLVDCESQVYLLEVNS 348


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 230 RWSRRRDVDNNLCVSVIHYVVLRHRYYDWSTHVDL 126
           +W +  DVD +LC   +++ V  +R+ + S  VDL
Sbjct: 458 KWIKNNDVDESLC---LNFSVEENRFGE-SVTVDL 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 979,732
Number of Sequences: 5004
Number of extensions: 15042
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)