Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B22
         (270 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0002 - 11387119-11387780,11388756-11388954,11389033-113891...    27   2.1  
04_04_1171 - 31455136-31455482,31455805-31458982                       27   2.1  
12_02_0921 - 24352178-24352324,24352840-24352890,24354188-243542...    26   3.6  

>09_03_0002 -
           11387119-11387780,11388756-11388954,11389033-11389106,
           11389840-11390323,11390439-11390450
          Length = 476

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 224 SRRRDVDNNLCVSVIHYVVLRHRYYDWSTHVD 129
           SR +D+D N+ +S  H  +   +  DW   VD
Sbjct: 84  SRPQDIDGNIEISKPHVAISESKEEDWLEDVD 115


>04_04_1171 - 31455136-31455482,31455805-31458982
          Length = 1174

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 233  SRWSRRRDVDNNLCVSVIHYVVLRHRYYDWS-THVDL 126
            SRW+ R  +   +CVSV H +V  H  YD+   H D+
Sbjct: 971  SRWTVRERL--RVCVSVAHGLVYLHSGYDFPVVHCDV 1005


>12_02_0921 -
           24352178-24352324,24352840-24352890,24354188-24354253,
           24354771-24354875
          Length = 122

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 82  CYIELSMIV*LKCFYSIFLHACTT 11
           C I+L  I  L+ +YSIF+H+ +T
Sbjct: 46  CVIKLYKIGRLQVYYSIFIHSSST 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,031,250
Number of Sequences: 37544
Number of extensions: 87676
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)