Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B22
         (270 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6964| Best HMM Match : DUF963 (HMM E-Value=4.2)                     29   0.78 
SB_28785| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_6964| Best HMM Match : DUF963 (HMM E-Value=4.2)
          Length = 131

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 116 HT*PQYNCFITMLYRTFYDCLTKVFLFDISSR---VHNN 9
           HT   Y CF+ +L R   +   KVF F++SS    VH N
Sbjct: 72  HTPMYYYCFLIVLLRAGIEIEAKVFNFEMSSARADVHGN 110


>SB_28785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 170 VLRHRYYDWSTHVDL*LHHT*PQYNCFITMLYRTFYDCLTKVF 42
           VL+HRYY  +T + L      P    ++   +R F +  TK+F
Sbjct: 98  VLKHRYYTRNTEIHLITATRWPSPRKYLFRYFRYFPNYRTKLF 140


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 122 LHHT*PQYNCFITMLYRTFYDCLTKVFLFDISSRVHNNRL 3
           LH + P  N  I  LY+ F  CLTK F+      V +N +
Sbjct: 546 LHTSPPSLN--IPTLYKEFIFCLTKRFVKSKGLSVDDNEI 583


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,312,538
Number of Sequences: 59808
Number of extensions: 119336
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)