Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B22
         (270 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18160.1 68417.m02698 outward rectifying potassium channel, p...    26   3.0  
At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containi...    26   3.9  
At1g48360.1 68414.m05402 expressed protein ; expression supporte...    25   5.2  

>At4g18160.1 68417.m02698 outward rectifying potassium channel,
           putative (KCO6) similar to kco1 [Arabidopsis thaliana]
           gi|2230761|emb|CAA69158; member of the 2 pore, 4
           transmembrane (2P/4TM) K+ channel family, PMID:11500563
          Length = 436

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 212 DVDNNLCVSVIHYVVLRHRYYDWSTHVDL 126
           D+DNN CVS   YV+ + +  +  T  D+
Sbjct: 378 DIDNNGCVSKAEYVIYKLKEMEKITDKDI 406


>At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 830

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 101 YNCFITMLYRTFYDCLTKVFLFDISSRVHNNRL 3
           Y C +  L +  YDC+T   L   ++R  N +L
Sbjct: 361 YMCQLMRLEKLKYDCVTLATLMSAAARTENLKL 393


>At1g48360.1 68414.m05402 expressed protein ; expression supported
           by MPSS
          Length = 688

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 236 FSRWSRRRDVDNNLC 192
           FSR SR+RD+ N+LC
Sbjct: 200 FSRTSRKRDLINSLC 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,968,930
Number of Sequences: 28952
Number of extensions: 73908
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 212138304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)