Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B21
(355 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 28 0.48
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 27 0.85
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 1.1
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 26 1.5
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 25 2.6
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c... 25 2.6
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 25 4.5
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 4.5
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 25 4.5
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 24 7.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 7.9
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.9 bits (59), Expect = 0.48
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 275 TKHRYQVKGKHQLLALVEHHDKQLR 349
T +YQ + K++L AL+E + KQLR
Sbjct: 842 TSQKYQSELKNELYALLEQYKKQLR 866
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 27.1 bits (57), Expect = 0.85
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 165 EPSRMDPNSEWLPNSI 212
EP +DPNS W PN +
Sbjct: 315 EPEGLDPNSWWYPNGL 330
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 1.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 154 ICSIRSCQ*INSRCFLSAFCILYSC 80
+ SIR+C +CF AFC + C
Sbjct: 225 LVSIRTCMLNAKKCFTDAFCEILRC 249
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 26.2 bits (55), Expect = 1.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 235 NYNCCPKGIEFGNHSELGSIRDGSRPEICSIRS 137
+YN P + FGNH +LG D SR E+ I S
Sbjct: 287 DYNV-PFAVNFGNHDDLG---DLSREELAKILS 315
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 2.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 143 PFLSINKFALFSICLLYLIFMQVA 72
P L ++ LF +C+L IF+Q +
Sbjct: 425 PILWLSSHVLFGVCMLSTIFLQTS 448
>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 143 DGTNLRTGTVPNGSQFRMVTEFNT 214
+G +T TVP QF V EFN+
Sbjct: 68 EGEKTKTETVPTRKQFPKVGEFNS 91
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 97 KRQIENNANLFIDKNGWNKSQ 159
K + ENN ++ I+ +G+NK Q
Sbjct: 283 KMEKENNLDIMIEASGFNKKQ 303
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 63 SQSGDLHEYKIQKADRKQREFIY*QERMEQISGREPSRMDPNSE 194
+Q+ +H+ + ++ IY +ER+E++ R+ NSE
Sbjct: 32 TQNQTVHQQLHSNIEESKKSIIYLEERLEKLKLRKNGVRKSNSE 75
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 24.6 bits (51), Expect = 4.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -2
Query: 267 LHLIRKNEGYKIIIVVQRVLN 205
L LI+ + +K+I+ VQR+++
Sbjct: 200 LDLIKSTDAFKVILCVQRIIS 220
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 172 PEWIPIQNGYRIQYPLDNNYNF 237
PE+ + N Y+++Y LD+ F
Sbjct: 73 PEFKALANSYKLKYGLDSGIRF 94
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 264 AVPKPNTVTRSRANINS*HWWNITTN 341
+ P PN V + +N+ W N+T++
Sbjct: 21 SAPGPNAVLQEGGGVNTVSWSNLTSS 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,313
Number of Sequences: 5004
Number of extensions: 32650
Number of successful extensions: 83
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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