Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B21
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879...    27   5.6  
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           26   7.4  
03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891...    26   7.4  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    26   9.8  
04_03_0735 + 19141038-19143227                                         26   9.8  

>04_04_1532 -
           34187153-34187308,34187426-34187551,34187856-34187977,
           34188058-34188181,34189671-34189821,34190506-34190720,
           34191142-34191343,34191423-34191597,34191746-34192055,
           34192141-34192356
          Length = 598

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 100 RQIENNANLFIDK--NGWNKSQDGNRPEWIP 186
           + IE++ NLF  K    WNK +DGN   ++P
Sbjct: 309 KTIEDSWNLFHKKFVELWNKHKDGNGEAYLP 339


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 88   IRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPL 219
            +R+K  I+N    + D NG+  S+     + IP+Q  Y   YP+
Sbjct: 886  VRFKTDIDNQGVFYSDLNGFQMSRRQTYDK-IPLQGNY---YPM 925


>03_06_0732 -
           35788417-35788485,35788776-35788871,35788963-35789148,
           35789898-35789959,35790063-35790304,35790418-35791517
          Length = 584

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 138 ERMEQISGREPSRMDPNSEWLPNSIPF 218
           E+   + GR PS   P+S W+P S+ F
Sbjct: 481 EQQACMLGRAPSPRSPSSPWMPFSMLF 507


>09_02_0250 +
           6266818-6267029,6267230-6267287,6267999-6268118,
           6272359-6272511,6273381-6273586,6274280-6274733,
           6276573-6276610,6276923-6277046,6277184-6277246,
           6277350-6277412,6277526-6278152,6278267-6278294,
           6278373-6278413,6278689-6278851,6278987-6279039,
           6279217-6279262,6279373-6279444,6279578-6279741,
           6279968-6280099,6280249-6280565,6280721-6280892,
           6281009-6281107,6281275-6281349,6281446-6281504,
           6281647-6281836,6281982-6282020
          Length = 1255

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 163 GNRPEWIPIQNGYRIQYPLDNNYN 234
           G RP   PI+ GYR +    NN+N
Sbjct: 232 GYRPPLAPIRQGYRHRSSNSNNHN 255


>04_03_0735 + 19141038-19143227
          Length = 729

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 52  LGFIAS--QATCMNIRYKR-QIENNANLFIDKNGWNKSQDG 165
           + ++AS  Q TC + R  R QI    N+F  K  W K   G
Sbjct: 555 ISWVASGFQKTCGDFRVGRYQISETVNIFSHKVSWTKGPRG 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,817,101
Number of Sequences: 37544
Number of extensions: 193831
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)