Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B21
         (355 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)                28   1.9  
SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         28   2.5  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 27   4.4  
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)                 27   5.8  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.8  
SB_58936| Best HMM Match : GBP (HMM E-Value=2.2e-05)                   26   7.7  
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  26   7.7  

>SB_26296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 40  ALLILGFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRP 174
           A +I GF+  +  C  +RY  Q+    N    +N W+ S   NRP
Sbjct: 6   ATIIRGFLKFRIICEKVRYFTQLRACYN--PQQNKWDTSHTNNRP 48


>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
          Length = 997

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +1

Query: 52  LGFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRPEWIPIQNGYRIQYPLDNNY 231
           LG I SQA   NIR   Q   N +L +     N      +    P+Q GY+   PL +NY
Sbjct: 612 LGQITSQAIGSNIR---QDVANVSLPLQMPISNPKTSVPQGGATPMQFGYQGYGPLQHNY 668

Query: 232 NFIAFIFP 255
             +  IFP
Sbjct: 669 GDMNTIFP 676


>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 55  GFIASQATCMNIRYKRQIENNANLFIDKNGWNKSQDGNRPEWIP 186
           G +  +A C+  + K   E  A   I  NGWNK+ D    EW+P
Sbjct: 18  GPLIYEAKCIRGQLK---EKTARYLIHYNGWNKNWD----EWVP 54


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -3

Query: 152 LFHPFLSINKFALFSICLLYLIFMQVA*LAIKPSIRSAHSLSISNYNNKN 3
           +F P + I  F +  ICL+ L++ ++  +A + S +++ + +   YN+ N
Sbjct: 167 IFDP-IQILVFVILPICLMLLVYARIFVIARRISKQTSQTQNQLRYNDNN 215


>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
          Length = 587

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 189 NWDPFGTVPVLRFVPSVLVNK*IRVVFYLPFVS 91
           +W P   VP+ +  P V VNK +R +   P +S
Sbjct: 276 SWKPADVVPLPKLKPVVDVNKHLRPISLTPAIS 308


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 163  GNRPEWIPIQNGYRIQYPLDNNYNFIAFIFPN 258
            G+R  ++ IQNG +    ++ + +   ++FPN
Sbjct: 1122 GSRDSFVAIQNGRQWMLDIEESISIAFYVFPN 1153


>SB_58936| Best HMM Match : GBP (HMM E-Value=2.2e-05)
          Length = 480

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 261 LIRKNEGYKIIIVVQRVLNSVTILNWDPFGTVPVLRF 151
           L+ KN+    + VV R+L ++T +  D F + P+L +
Sbjct: 7   LVSKNKQEGALGVVSRILTNLTSVGADIFKSAPLLNY 43


>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 152 LFHPFLSINKFALFSICLLYLIFMQVA*LAIKPSIRSAHSLSISNYN 12
           +F P L ++ F +FS  L+++ +  V  +   P++   + L   N+N
Sbjct: 381 VFSPLLGVSTFGIFSALLVFVNYCSV--ITFFPTVVITYELYWKNWN 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,655,330
Number of Sequences: 59808
Number of extensions: 233042
Number of successful extensions: 513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)