Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B17
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    28   0.84 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   2.6  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    26   3.4  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    25   5.9  
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    25   5.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   7.8  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   7.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   7.8  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   7.8  

>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 341 HRTFPTVQAKTSMVLDSYLPILLASQL 261
           HR F TV A+T  VLD  +P L+ ++L
Sbjct: 30  HRQFSTVPARTIDVLDITVPTLVGAEL 56


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 264 LGSQEDWQIGIENHTCLRLHCRKRSVDGIQKYRPSIHTAYHQHDLSVIKDGA 419
           L S  D Q  ++  T   LH RK+SVDG  ++  S+   Y    L V++ GA
Sbjct: 581 LPSSNDEQTPVKE-TIPFLHIRKKSVDGNWEFNKSLTGTY----LDVLESGA 627


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 540 ENLFTVDDFKSANEIYVKAQNIVEGKKETLEE 445
           E L+++  F+  +EI++   N +EG  ++ EE
Sbjct: 94  ERLWSLHSFEDIHEIFISLGNYIEGVYDSEEE 125


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 384 HQHDLSVIKDGAGINHNVLSVPQEFLFYPQQYFELSH 494
           H ++ + + + +G+  N  ++ +   FYPQ  F +SH
Sbjct: 169 HYYNKTYVINYSGLKLNSSAINKRSYFYPQDSFLVSH 205


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 368 NTYGIPPTRPFGNKRWCGNKSQCL 439
           N   +PP   +  + WC N  +CL
Sbjct: 75  NLKKMPPCHFYAERGWCSNGEECL 98


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 172 RDRSSLQLLNEYYFNG 125
           R+R+SL  L+EYY NG
Sbjct: 374 RNRNSLSNLDEYYVNG 389


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 292 ESRTILVFACTVGNVRWMEFRNIDHQYIRHTTNTTF 399
           +S  + V     G+VR  + R++DH  I +  ++TF
Sbjct: 220 DSINVFVSVGADGSVRMFDLRSLDHSTIIYEGDSTF 255


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 184  QTYSRDRSSLQLLNEYYFNGFLYVYIYV--YLNIDY 83
            QT    R++L+L +   F G LY+ +Y+  Y+N DY
Sbjct: 1173 QTKLIGRAALELRDSKVFKGLLYLILYLGNYMN-DY 1207


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 428 IYSRTIFYYRKVVLVVCRMY*WSIF 354
           I  R  F YRK + +V  ++ WS+F
Sbjct: 425 IQLRDYFDYRKHICIVTDLFGWSVF 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,952
Number of Sequences: 5004
Number of extensions: 50473
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)