Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B17
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816...    29   2.0  
02_05_1217 + 34999631-34999945,35000670-35000835,35001908-350020...    28   4.6  

>01_06_1728 +
           39480252-39480450,39480552-39481224,39481554-39481638,
           39481731-39481820,39481953-39482026,39482421-39482505,
           39482582-39482668,39482797-39482927,39483642-39483723,
           39483810-39483857,39484793-39484912
          Length = 557

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 348 FHPPNVSYSASEDKYGSRFLSANPLGFPVD 259
           +H P  SYS S+DK G   LS   + F V+
Sbjct: 322 YHTPKSSYSYSDDKLGGNVLSVGDIPFFVN 351


>02_05_1217 + 34999631-34999945,35000670-35000835,35001908-35002005,
            35002245-35002319,35002413-35002481,35002552-35002637,
            35002710-35002827,35003575-35003902,35003995-35005682,
            35005822-35005881,35005953-35006027,35006105-35006197,
            35006298-35006372,35006464-35006532,35006614-35006682,
            35006994-35007113
          Length = 1167

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 300  NHTCLRLHCRKRSV--DGIQKYRPSIHTAYHQHDLSVIKDGAGINHNVLSV 446
            N + L +  R R+V  +  Q + PSI   YHQ ++S +++   IN   +S+
Sbjct: 950  NESELNITVRNRNVILNSCQDHGPSISRTYHQDEMSQMEEVPEINGPSVSI 1000


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,153,378
Number of Sequences: 37544
Number of extensions: 310845
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)