Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B17
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58174| Best HMM Match : 3_5_exonuc (HMM E-Value=1e-12)              29   3.5  
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               28   6.2  
SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_4943| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  
SB_58034| Best HMM Match : VWA (HMM E-Value=0)                         27   8.2  

>SB_58174| Best HMM Match : 3_5_exonuc (HMM E-Value=1e-12)
          Length = 322

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 393 DLSVIKDGAGINHNVLSVPQEFLFYPQQYFELS 491
           D +++K G GIN +V  + +E+  YP+   +LS
Sbjct: 211 DETIVKVGVGINSDVDKISREYDVYPRGIVDLS 243


>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 199 CHDPSQTYSRDRSSLQLLNEYYFNGFLYVYIYVYLNI 89
           CH  +    R  S L++    Y   ++YVY+YVY+ +
Sbjct: 249 CHRNAYASRRPFSMLRVYVYVYVYVYVYVYVYVYVYV 285


>SB_33494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 363 PSIHTAYHQHDLSVIKDGAGINHNVLSVPQE 455
           PSIH A  + DL+ IK+  G+   + SVP E
Sbjct: 812 PSIHDAAKKGDLARIKELIGVAPAMKSVPDE 842


>SB_4943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 339 VDGIQKYRPSIHTAYHQHDLS 401
           VDGI K  P    A+H HD+S
Sbjct: 25  VDGIDKLDPQRRVAFHIHDIS 45


>SB_58034| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1203

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 411  LLLPKGRVGGMPYVLMVYISEFHPPNVSY 325
            ++ PK R+GG+P   +V+I +F   NV+Y
Sbjct: 936  VVAPKERLGGLPLSTLVFIGKF-GKNVNY 963


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,364
Number of Sequences: 59808
Number of extensions: 372065
Number of successful extensions: 1091
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)