Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B12
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 243 1e-65
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 243 2e-65
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 8e-05
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 1.9
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 26 3.2
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 26 4.3
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 25 5.7
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 25 9.9
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 243 bits (595), Expect = 1e-65
Identities = 112/182 (61%), Positives = 136/182 (74%)
Frame = +3
Query: 9 HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 188
H+G++N+ +M+ YV+KRR DG H++NL +TWEK E+PADV V+S+R +G
Sbjct: 26 HIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYG 85
Query: 189 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 368
RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V DP D Q I EAS+VNIP
Sbjct: 86 HRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIP 145
Query: 369 VIALCNTDSPLRFVDIAIPCNTXSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFF 548
VIALC+TDS L VDIAIP N SIGL+W+LLAREVLR+RG LSR WDV+ DL+F
Sbjct: 146 VIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYF 205
Query: 549 YR 554
YR
Sbjct: 206 YR 207
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 243 bits (594), Expect = 2e-65
Identities = 115/183 (62%), Positives = 136/183 (74%)
Frame = +3
Query: 6 THLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAF 185
+H+G++N+ +ME YV+KRR DG H+INL +TWEK E+PADV VISSR +
Sbjct: 26 SHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPY 85
Query: 186 GQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNI 365
G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+VNI
Sbjct: 86 GHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNI 145
Query: 366 PVIALCNTDSPLRFVDIAIPCNTXSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLF 545
PVIALC+TDS L VD+AIP N SIGL W+LLAREVLRLRG +SR W+V+ DL+
Sbjct: 146 PVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLY 205
Query: 546 FYR 554
FYR
Sbjct: 206 FYR 208
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 8e-05
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +3
Query: 294 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTXSSHSIGLMWWLL 473
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 474 AR 479
+R
Sbjct: 240 SR 241
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 450 IGLMWWLLAREVLRLRGVLSRDQRWD 527
IGL W L REV R + + +R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.2 bits (55), Expect = 3.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 347 FSNWLMILSRVQNNQQPWFA 288
F N L+++ + Q+N++PW A
Sbjct: 498 FQNALLLVKKTQSNEKPWAA 517
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +3
Query: 378 LCNTDSPLRFVD--IAIPCNTXSSHSI-GLMWWLLAREVLRLRGVLSRDQRWDV 530
L D ++ D +A N HS+ G +W+ A EV+ L G + W V
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 459 MWWLLAREVLRLRGVLSRDQRW 524
+WW L+R+ R LSR +W
Sbjct: 68 IWWSLSRKATRFYRWLSRSLKW 89
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 282 AFREPRLLIVLDPAQDHQPITEASY 356
A R+ RLL+++ P H P+ Y
Sbjct: 62 AGRDDRLLLIVGPCSLHDPVAAKEY 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,761
Number of Sequences: 5004
Number of extensions: 40903
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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