Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B12
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               283   9e-77
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)           31   0.84 
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   28   5.9  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 28   5.9  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  283 bits (693), Expect = 9e-77
 Identities = 127/182 (69%), Positives = 149/182 (81%)
 Frame = +3

Query: 9   HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 188
           HLGA N +FQME YVYKR+ DG ++IN+++TWEK           E+PADV VIS+R +G
Sbjct: 24  HLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIVTIENPADVCVISARPYG 83

Query: 189 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 368
           QRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP  DHQP+TEASYVNIP
Sbjct: 84  QRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIP 143

Query: 369 VIALCNTDSPLRFVDIAIPCNTXSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFF 548
           VIA CNTDSPLR VD+AIPCN    HSIGLM+WLLAREVLR+RG +SR   W+++ DL+F
Sbjct: 144 VIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYF 203

Query: 549 YR 554
           YR
Sbjct: 204 YR 205


>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
          Length = 432

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 312 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 407
           LDP  +HQPIT+ +   I ++A   TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -1

Query: 541  KSTTTSQRWSRLRTPRSLNTSRANNHHIRPMECEDXVLHGIAMST-NL---RGESVLHKA 374
            K+TT   RWS+ +TP      ++   H   +     + HG   ST NL   + + VL++ 
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453

Query: 373  ITGMLTY 353
              G +TY
Sbjct: 1454 ELGTMTY 1460


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +3

Query: 390 DSPLRFVDIAIPCNTXSSHSIGLMWWLLAREVLRLRGVLSRDQR 521
           +SPL +  I +PCNT +S+     W+LLA  +  ++ VL  D R
Sbjct: 495 ESPLSYDLILVPCNTPNSNH----WFLLA-VLPHMKAVLLLDSR 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,247
Number of Sequences: 59808
Number of extensions: 339691
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)