Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B12
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   244   4e-65
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   236   6e-63
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   223   6e-59
At1g80540.1 68414.m09441 expressed protein ; expression supporte...    32   0.30 
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    31   0.39 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   1.2  
At5g51370.1 68418.m06369 F-box family protein similar to unknown...    29   2.1  
At5g51380.1 68418.m06370 F-box family protein contains Pfam PF00...    27   8.4  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  244 bits (596), Expect = 4e-65
 Identities = 108/182 (59%), Positives = 134/182 (73%)
 Frame = +3

Query: 9   HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 188
           HLG +N N+QME YV+KRR DG ++ NL +TWEK           E+P D+ V S+R +G
Sbjct: 28  HLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYG 87

Query: 189 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 368
           QRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP
Sbjct: 88  QRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIP 147

Query: 369 VIALCNTDSPLRFVDIAIPCNTXSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFF 548
           +IA C+TDSP+RFVDI IP N    HSIG ++WLLAR VL++RG ++  Q+WDV+VDLFF
Sbjct: 148 IIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFF 207

Query: 549 YR 554
           YR
Sbjct: 208 YR 209


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  236 bits (578), Expect = 6e-63
 Identities = 106/182 (58%), Positives = 131/182 (71%)
 Frame = +3

Query: 9   HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 188
           HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P D+ V S+R +G
Sbjct: 29  HLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYG 88

Query: 189 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 368
           QRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP
Sbjct: 89  QRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIP 148

Query: 369 VIALCNTDSPLRFVDIAIPCNTXSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVDLFF 548
            IA C+TDSP+ FVDI IP N    HSIG ++WLLAR VL++RG +   Q+WDV+VDLFF
Sbjct: 149 TIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFF 208

Query: 549 YR 554
           YR
Sbjct: 209 YR 210


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  223 bits (545), Expect = 6e-59
 Identities = 100/177 (56%), Positives = 126/177 (71%)
 Frame = +3

Query: 9   HLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDPADVFVISSRAFG 188
           HLG +N N+QME YV+KRR DG ++INL +TW+K           E+P D+ V S+R +G
Sbjct: 29  HLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYG 88

Query: 189 QRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIP 368
           QRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E +  NIP
Sbjct: 89  QRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIP 148

Query: 369 VIALCNTDSPLRFVDIAIPCNTXSSHSIGLMWWLLAREVLRLRGVLSRDQRWDVVVD 539
            IA C+TDSP+ FVDI IP N    HSIG ++WLLAR VL++RG +   Q+WDV+V+
Sbjct: 149 TIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVN 205


>At1g80540.1 68414.m09441 expressed protein ; expression supported
           by MPSS
          Length = 481

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 161 HISWILHGDNSTSSEYKLFPCTPKINYVRT 72
           H +  + G N T+S Y   PC P +NY+RT
Sbjct: 79  HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 294 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 413
           P  ++V D  +    I EAS + IPV+A+ + + PL F +
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFE 170


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 249 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 350
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g51370.1 68418.m06369 F-box family protein similar to unknown
           protein (emb|CAB82288.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 355

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 448 ECEDXVLHGIAMSTNLRGESVLHKAITGMLTYEASVIG 335
           +C D +LHGIA   NL+G  ++  ++ G+ +   S IG
Sbjct: 183 KCNDNLLHGIAACKNLKGLRLV-GSVDGLYSSSVSDIG 219


>At5g51380.1 68418.m06370 F-box family protein contains Pfam
           PF00646: F-box domain; similar to  F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 479

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 448 ECEDXVLHGIAMSTNLRGESVLHKAITGMLTYEASVIG 335
           +C D +L GIA   NLRG  ++  ++ G+ +   S IG
Sbjct: 219 KCSDNLLRGIAACENLRGLRLV-GSVDGLYSSSVSDIG 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,847,919
Number of Sequences: 28952
Number of extensions: 221423
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)