Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B11
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    30   0.22 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   2.0  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    27   2.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.7  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 140 LQTTYEQRVCSLQATYEQRVCNLQATCSLQDTREIPCDYSDIN 12
           +Q TY+ ++C  +   E   CNL   C   D     C ++D N
Sbjct: 160 IQKTYDHKLCLRKTISEPVKCNLCYECIESDELRANCPFTDCN 202


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -1

Query: 151 ECATCRPPTSNECAACRPPTNNECATCRLPARCKTHGRYHATIL 20
           +C   +PP S  C AC+   N     C     C    R H T L
Sbjct: 404 KCFQVKPPRSYHCGACKRCINRYDHHCPWTGNC-VGARNHRTFL 446


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 243 QPADHLRATSVQPADHLRATSVQPAGHLRVTSVQPADHLRATSVQPAGHL 94
           +PA+++     +P D   + SV        T++   D+L   SV+   HL
Sbjct: 8   EPAENIEQPKQEPEDGNNSMSVDEQPETSSTNLPTGDNLAPMSVESPAHL 57


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 229 PSSNECATCRPPTSNECATCRTPTSNECATCRPPTS--NECAACRPPTNNECATCRLP 62
           PS+N   T     S E +T    ++N  +   PP++  N      PPT +   T  +P
Sbjct: 40  PSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVP 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,311
Number of Sequences: 5004
Number of extensions: 54565
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)