Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B11
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 35 0.047
At4g19270.1 68417.m02841 hypothetical protein 31 0.43
At5g01450.1 68418.m00058 expressed protein 30 1.0
At5g65860.1 68418.m08289 ankyrin repeat family protein contains ... 29 2.3
At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat... 29 3.1
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein... 29 3.1
At3g18280.1 68416.m02325 protease inhibitor/seed storage/lipid t... 29 3.1
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 29 3.1
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 28 4.1
At3g05830.1 68416.m00654 expressed protein 28 4.1
At2g20440.1 68415.m02386 RabGAP/TBC domain-containing protein si... 28 4.1
At1g49270.1 68414.m05524 protein kinase family protein contains ... 28 5.4
At5g57380.1 68418.m07169 fibronectin type III domain-containing ... 27 9.4
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 27 9.4
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 34.7 bits (76), Expect = 0.047
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = -2
Query: 252 SSVQPADHLRATSVQPADHLRATSVQPAGHLRVTSVQPADHLRATSVQPAGHLRTTSVQP 73
S+ PA L A P+ + ++ PAGHL S P+ + ++ PAGHL + S P
Sbjct: 618 STSLPAGQLGAPPATPSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPAGHLGSPSDTP 677
Query: 72 A 70
+
Sbjct: 678 S 678
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -2
Query: 252 SSVQPADHLRATSVQPADHLRATSVQPAGHLRVTSVQPADHLRATSVQPAGHLRTTSVQP 73
S+ PA HL + S P+ + ++ PAG L P+ + ++ PAGHL + S P
Sbjct: 596 STSPPAGHLGSPSDTPSSVVSPSTSLPAGQLGAPPATPSMVVSPSTSPPAGHLGSPSDTP 655
Query: 72 A 70
+
Sbjct: 656 S 656
>At4g19270.1 68417.m02841 hypothetical protein
Length = 141
Score = 31.5 bits (68), Expect = 0.43
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Frame = +2
Query: 32 MVSPVCLAASR*PAGC--TLVVRR-W---PAGC---TLVARRWSAGCTLVTRRCPAGCTL 184
+V P R GC T+VVRR W GC +V RRW +G CPA T+
Sbjct: 5 VVVPAAAVIRRRRRGCPATVVVRRRWLSGDGGCPATVVVRRRWLSGDG--GGGCPAMVTV 62
Query: 185 VARRW 199
V RRW
Sbjct: 63 VVRRW 67
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 352 RRNVISSDNWLIVITTISFCNYIKNTLI*FLHSVVN 459
R N S D W V+ +FC ++ TLI L+ N
Sbjct: 62 RNNSTSEDPWSCVVVVATFCIFVSMTLILGLYGTTN 97
>At5g65860.1 68418.m08289 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 346
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 96 GGLQAAHSLLVGGLQVAHSLLVGVLQVAHSLLVGGLQVAHSLLEGG 233
G L+ +L+ G V H G+ + H+ +G ++ +LLE G
Sbjct: 34 GDLKKVQTLIYSGADVTHFDNDGLTPLMHAAKIGNAEIVTALLESG 79
>At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 286
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -1
Query: 148 CATCRPPTSNECAACRPPT-NNEC 80
C++C P +N+C AC P +N C
Sbjct: 72 CSSCCPKLNNKCPACTSPVGHNRC 95
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 214 CATCRPPTSNECATCRTPTS-NEC 146
C++C P +N+C C +P N C
Sbjct: 72 CSSCCPKLNNKCPACTSPVGHNRC 95
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = -1
Query: 115 CAACRPPTNNECATCRLPA---RCK 50
C++C P NN+C C P RC+
Sbjct: 72 CSSCCPKLNNKCPACTSPVGHNRCR 96
>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 281
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -1
Query: 115 CAACRPPTNNECATCRLPA---RCKTHGRYHATIL 20
C++C P N+C C LP RC+ R ++L
Sbjct: 66 CSSCCPKLRNKCPACALPVGHIRCRAMERVLESVL 100
>At3g18280.1 68416.m02325 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to TED4
[Zinnia elegans] GI:493721; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 96
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = -1
Query: 250 ECATCRPPSSNECATC----RPPTSNECATCRTPTSNECATCRPPTSNECAACRPPTNNE 83
E TC P + CAT PP++ CA + C R P+ + P
Sbjct: 27 EAVTCSPMQLSPCATAITSSSPPSALCCAKLKEQRPCLCGYMRNPSLRRFVS-TPNARKV 85
Query: 82 CATCRLP-ARC 53
+C+LP RC
Sbjct: 86 SKSCKLPIPRC 96
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = -1
Query: 253 IECATCRPPSSNECATCRPPTSNECATCRTPTSNECATCRPPTSN-ECAACRPPTNNECA 77
+EC C C P C++C+ N C TCR N C A +
Sbjct: 55 LECPVCTNLMYPPIHQC-PNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEV 113
Query: 76 TCR 68
CR
Sbjct: 114 PCR 116
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = -1
Query: 253 IECATCRPPSSNECATCRPPTSNECATCRTPTSNECATCRPPTSN-ECAACRPPTNNECA 77
+EC C C P C+ C+ N C TCR N C A +
Sbjct: 58 LECPVCTNLMYPPIHQC-PNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEV 116
Query: 76 TCR 68
CR
Sbjct: 117 PCR 119
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 125 EQRVCSLQATYEQRVCNLQATCSLQD 48
E +C LQ E+R C L+A+ S D
Sbjct: 66 EMEICKLQKRLEERNCQLEASASAAD 91
>At2g20440.1 68415.m02386 RabGAP/TBC domain-containing protein
similar to SP|P09379 GTPase-activating protein GYP7
(Fragment) {Yarrowia lipolytica}; contains Pfam profile
PF00566: TBC domain
Length = 425
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 203 AGCTLVARRWSAGCTLDARRDLYTSLRLI 289
AG TL ARRW A T D D+ LR I
Sbjct: 38 AGKTLSARRWHAAFTEDGHLDMEKVLRRI 66
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -1
Query: 232 PPSSNECATCRPPTSNECATCRTPTSNECATCRPPTSNECAACRPPTNNE 83
PP+ + PP+SN+ T P S+ T PP + PP +
Sbjct: 11 PPAPPPPSPPSPPSSNDQQTTSPPPSDNQETTSPPPPSSPDIAPPPQQQQ 60
>At5g57380.1 68418.m07169 fibronectin type III domain-containing
protein / PHD finger protein-related contains Pfam
profiles PF00041: Fibronectin type III domain, PF00628:
PHD-finger
Length = 600
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 37 ISRVSCSEQVACRLHTRCS*VACRLHTRCS*VVCR 141
I + C E +ACR C CR RCS +C+
Sbjct: 104 IGYIICCENLACRAALGCDDTFCR---RCSCCICQ 135
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 148 CATCRPPTSNECAACRPPTNN 86
C +C P SN+C AC P +
Sbjct: 59 CGSCCPKLSNKCPACTLPVGH 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,737
Number of Sequences: 28952
Number of extensions: 299266
Number of successful extensions: 888
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -