Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B09
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    93   2e-20
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    26   2.3  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   4.1  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   4.1  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   5.4  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   5.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   5.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   7.1  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    24   7.1  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    24   9.4  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.4  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    24   9.4  

>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 92.7 bits (220), Expect = 2e-20
 Identities = 42/62 (67%), Positives = 49/62 (79%)
 Frame = +3

Query: 69  KAYGARYVGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLYECXPMAFIVTEAGGVATQ 248
           K Y ARY+GSMVAD+HRTI YGG+F YP +K   NGKLRLLYEC PMAF+V +AGG+A  
Sbjct: 253 KPYSARYIGSMVADMHRTILYGGLFAYPCSK-GNNGKLRLLYECFPMAFLVEQAGGIAVN 311

Query: 249 WK 254
            K
Sbjct: 312 DK 313



 Score = 28.7 bits (61), Expect = 0.33
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 262 ILDIQPTAIHQRAPCYLGSKNDVAE 336
           ILD+ P  +H ++  +LGSK++V E
Sbjct: 317 ILDLVPKTLHGKSSIWLGSKHEVEE 341


>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 202 LHSYSSRNFPLGADFVAGYIKIPPYLMVL 116
           L SYS +++     +V GY+ I PYLM L
Sbjct: 9   LQSYSLKDWIRIIVYVGGYMLIRPYLMKL 37


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 249 WKDTHSRH-TTDCHTSTCALLPRV*ERRRRI 338
           WK   + H T D      +L+P+V ++RRR+
Sbjct: 599 WKQFEAMHGTEDTRKHVSSLMPQVVKKRRRL 629


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/49 (20%), Positives = 22/49 (44%)
 Frame = +2

Query: 206 YGVHRDRGGWCRDPMERYPF*TYNRLPYINVRLATSGLRTTSQNCYTIL 352
           YG   +   +C +  E+YP    +R  Y   +L ++  + + +  +  L
Sbjct: 607 YGPPTENNEYCEEISEKYPITPVSRFAYAKTKLKSTCAKASRKRLFNQL 655


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 304 KAHVDVWQSVVCLEWVSFHWVATPPASVTMNAIGLHSYSSRNFPLGADFVAGYI 143
           +A  DV +SVV  +WV+  ++ T  A+     IG  +Y   N    + ++ GYI
Sbjct: 515 EALADVSESVVNGKWVAETFIYTTTAARLNYLIGDQTYKIANVE-SSFYLLGYI 567


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 131 ILDGSVYVGHHRTDIARAVSLSSFRSLFIFYVFHKA 24
           IL+ S+ +      +  AVS   F++LF   +FH+A
Sbjct: 256 ILESSIILHSVIIGLTTAVSGEEFKTLFPVIIFHQA 291


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 39   IEDKKRPKTGKAYGARYVGSMVADVHRTIKYGGIFMYPATKSA 167
            I   +RP+ G+ +      S  AD+ RT+  G I + P ++SA
Sbjct: 962  ISSTQRPQ-GRKFRGLMNQSSKADISRTVDAGSIKVVPNSQSA 1003


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 55  DRKLERLTARAMSVLWWPTYTEPSSMVVFLC 147
           D  L+R      +V+W   +  P  +V+F+C
Sbjct: 186 DEPLKRPNTSISNVIWLICFGAPLFLVIFIC 216


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 147 YPATKSAPNGKLRLLYECXPMAFIVTEAGGVATQWKD 257
           +P  +   NGKLR +    P    +   G +   W+D
Sbjct: 73  HPIKQDLKNGKLRYVANSFPYHGFIWNYGALPQTWED 109


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 67  ERLTARAMSVLWWPTYTEPSSMVVFLCTPLQSLHL 171
           ERL +   S L W  Y         LC P  + HL
Sbjct: 23  ERLISLGESFLEWSKYKHNLKATEELCRPYMAAHL 57


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 112 YTEPSSMVVFLCTPLQSLHLMES 180
           +TE SS V F C P  S+  ++S
Sbjct: 21  FTERSSSVFFECNPCYSIEKLKS 43


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 114 HRTIKYGGIFMYPATKSAPNGKLRLLYEC 200
           +R+  Y G  M    KSAP G + LL+ C
Sbjct: 162 NRSFDYEG--MLSTIKSAPEGSIFLLHAC 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,328
Number of Sequences: 5004
Number of extensions: 32021
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)