Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B09
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1458 + 37512954-37513112,37513217-37513324,37513357-375134... 95 2e-20
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881... 94 4e-20
05_04_0448 - 21349877-21349990,21350263-21350338,21350418-213505... 92 1e-19
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 64 4e-11
04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903... 36 0.011
01_01_1011 - 8003080-8004216 29 1.3
05_04_0415 - 21080600-21080941,21081119-21081217,21085363-210854... 27 3.8
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 27 6.7
12_02_0123 - 13930138-13932471 26 8.9
06_01_0165 + 1288107-1290476 26 8.9
>01_06_1458 +
37512954-37513112,37513217-37513324,37513357-37513431,
37513520-37513581,37513690-37513756,37514161-37514274,
37514357-37514443,37514571-37514641,37514718-37514783,
37514941-37515027,37515127-37515202,37515321-37515424,
37515550-37515583
Length = 369
Score = 95.1 bits (226), Expect = 2e-20
Identities = 43/80 (53%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = +3
Query: 21 EGLMKYIEDKKRPKTGKA-YGARYVGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLYE 197
E K++E K PK G + RY+GSMVADVHRT+ YGG+F+YPA K +PNGKLR+LYE
Sbjct: 244 EPTAKFVEKCKFPKDGSSPKSLRYIGSMVADVHRTLLYGGVFLYPADKKSPNGKLRVLYE 303
Query: 198 CXPMAFIVTEAGGVATQWKD 257
PM+F++ +AGG + K+
Sbjct: 304 VFPMSFLMEQAGGQSFTGKE 323
Score = 36.3 bits (80), Expect = 0.008
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 250 GKIPILDIQPTAIHQRAPCYLGSKNDVAE 336
GK LD+ PT IH+R+P +LGS DV E
Sbjct: 321 GKERALDLVPTKIHERSPIFLGSFEDVEE 349
>03_02_0486 -
8811539-8811610,8811725-8812231,8812327-8812551,
8812648-8813064
Length = 406
Score = 93.9 bits (223), Expect = 4e-20
Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Frame = +3
Query: 27 LMKYIEDKKRP-KTGKAYGARYVGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLYECX 203
L Y++ K P +GK Y ARY+GS+V D HRT+ YGGI+ YP + + NGKLRLLYEC
Sbjct: 297 LKSYMDSLKEPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDQKSKNGKLRLLYECA 356
Query: 204 PMAFIVTEAGGVATQWKDTHSR 269
PM+FIV +AGG + D H R
Sbjct: 357 PMSFIVEQAGG---KGSDGHQR 375
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 247 NGKIPILDIQPTAIHQRAPCYLGSKNDV 330
+G ILDI PT IHQR P Y+GS +V
Sbjct: 371 DGHQRILDIMPTEIHQRVPLYIGSVEEV 398
>05_04_0448 -
21349877-21349990,21350263-21350338,21350418-21350504,
21350706-21350771,21350855-21350925,21351030-21351116,
21351201-21351314,21351612-21351678,21351807-21351868,
21351960-21352085,21352091-21352381
Length = 386
Score = 92.3 bits (219), Expect = 1e-19
Identities = 41/71 (57%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = +3
Query: 33 KYIEDKKRPKTGK-AYGARYVGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLYECXPM 209
K++E K P+ G + RY+GSMVADVHRT+ YGGIF+YPA + +PNGKLR+LYE PM
Sbjct: 273 KFVEKCKFPQDGSPSKSLRYIGSMVADVHRTLLYGGIFLYPADQKSPNGKLRVLYEVFPM 332
Query: 210 AFIVTEAGGVA 242
+F++ +AGG A
Sbjct: 333 SFLMEQAGGQA 343
Score = 31.1 bits (67), Expect = 0.31
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 250 GKIPILDIQPTAIHQRAPCYLGSKNDVAE 336
GK L++ P IH R+P +LGS +DV +
Sbjct: 346 GKQRALELVPRKIHDRSPIFLGSYDDVED 374
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 64.1 bits (149), Expect = 4e-11
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +3
Query: 21 EGLMKYIEDKKRPKTG--KAYGARYVGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLY 194
EGL KYI+ ++ K K Y ARYV S+VAD HRT+ YGG+ M P LRL+Y
Sbjct: 213 EGLRKYIDTIRQGKGQHPKKYSARYVCSLVADFHRTLIYGGVAM------NPRDHLRLVY 266
Query: 195 ECXPMAFIVTEAGGVATQWK 254
E P++F+ +AGG + K
Sbjct: 267 EANPLSFLAEQAGGRGSDGK 286
Score = 35.9 bits (79), Expect = 0.011
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 247 NGKIPILDIQPTAIHQRAPCYLGSKNDVAE 336
+GK IL IQP +HQR P +LG D+ E
Sbjct: 284 DGKSRILSIQPVKLHQRLPLFLGGMEDMLE 313
>04_02_0036 -
9033411-9033746,9033961-9034032,9034122-9034222,
9034309-9034530,9034832-9034913,9035029-9035214,
9035311-9035445,9035543-9035641
Length = 410
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 123 IKYGGIFMYPATKSAPNGKLRLLYECXPMAFIVTEAGGVATQWKDT 260
+K GIF + +A KLRLL+E P+ F++ +AGG ++ K +
Sbjct: 320 VKEKGIFTNVTSPTA-KAKLRLLFEVAPLGFLIEKAGGYSSDGKQS 364
>01_01_1011 - 8003080-8004216
Length = 378
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 190 SSRNFPLGADFVAGYIKIPPYLMVLCTSATIEP 92
SSR FP G DFV +K PP++ + +A I P
Sbjct: 43 SSRMFPPGTDFVLA-LKKPPHVSHVTVAARIAP 74
>05_04_0415 -
21080600-21080941,21081119-21081217,21085363-21085455,
21085802-21085855,21085943-21086044,21086449-21086523,
21086662-21086784
Length = 295
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 280 SVVCLEWVSFHWVATPPASVTMNAIGLHSYSSRNFP 173
S C E +S +V+ P +TM I H + +NFP
Sbjct: 165 STDCRELISRIFVSDPSKRITMQEIKNHPWFLKNFP 200
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 131 WWYFYVPRYKVCT*WKVTATVRMQXYGVHRDRGGWCRDPMERYPF-*TYNRLPYINVRLA 307
WW +V +C W + + M +H+D GG +R + +++ P+
Sbjct: 476 WWCHFVNNNYLCYWWSIPSRTHM----LHKDSGG---SHAKRVSWLHAFDKFPFQKKHYM 528
Query: 308 TSGLRTTSQNCYTILNDIYC 367
+ + Q Y +L D+ C
Sbjct: 529 VHLVFSDEQRKYRVLFDVLC 548
>12_02_0123 - 13930138-13932471
Length = 777
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 152 GVHKNTTILDGSVYVGHHRTDIARAVSLSSFRS 54
G H N +LDG VG+HR + + + + +S
Sbjct: 359 GDHYNPFVLDGGTRVGYHRCRTDKLLKVQNQKS 391
>06_01_0165 + 1288107-1290476
Length = 789
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 298 HVDVWQSVVCLEWVSFHWVATPPASVT 218
H+ + ++V CL FH+++TPPA T
Sbjct: 417 HIGIIKTVKCL----FHYISTPPALYT 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,950,010
Number of Sequences: 37544
Number of extensions: 227833
Number of successful extensions: 641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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