Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B09
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /...   101   2e-22
At1g43670.1 68414.m05016 fructose-1,6-bisphosphatase, putative /...    99   1e-21
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    69   1e-12
At3g55800.1 68416.m06200 sedoheptulose-1,7-bisphosphatase, chlor...    44   3e-05
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    28   2.5  
At2g40610.1 68415.m05009 expansin, putative (EXP8) similar to ex...    27   4.3  
At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    26   9.9  
At3g01780.1 68416.m00118 expressed protein est hit,                    26   9.9  

>At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /
           D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative
           / FBPase, putative strong similarity to
           fructose-1,6-bisphosphatase [Brassica napus] GI:289367;
           identical to SP|P25851 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Arabidopsis thaliana}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 417

 Score =  101 bits (241), Expect = 2e-22
 Identities = 49/82 (59%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
 Frame = +3

Query: 27  LMKYIEDKKRP-KTGKAYGARYVGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLYECX 203
           L KYI+D K P  TGK Y ARY+GS+V D HRT+ YGGI+ YP    + NGKLRLLYEC 
Sbjct: 308 LKKYIDDLKDPGPTGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDAKSKNGKLRLLYECA 367

Query: 204 PMAFIVTEAGGVATQWKDTHSR 269
           PM+FIV +AGG   +  D HSR
Sbjct: 368 PMSFIVEQAGG---KGSDGHSR 386



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1

Query: 247 NGKIPILDIQPTAIHQRAPCYLGSKNDV 330
           +G   +LDIQPT IHQR P Y+GS  +V
Sbjct: 382 DGHSRVLDIQPTEIHQRVPLYIGSTEEV 409


>At1g43670.1 68414.m05016 fructose-1,6-bisphosphatase, putative /
           D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative
           / FBPase, putative very strong similarity to SP|P46267
           Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11)
           (D-fructose-1,6- bisphosphate 1-phosphohydrolase)
           (FBPase) {Brassica napus}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 341

 Score = 98.7 bits (235), Expect = 1e-21
 Identities = 46/71 (64%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
 Frame = +3

Query: 33  KYIEDKKRPKTGK-AYGARYVGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLYECXPM 209
           KY+E  K PK G  A   RYVGSMVADVHRT+ YGGIF+YPA K +PNGKLR+LYE  PM
Sbjct: 228 KYVEKCKFPKDGSPAKSLRYVGSMVADVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPM 287

Query: 210 AFIVTEAGGVA 242
           +F++ +AGG A
Sbjct: 288 SFLMEQAGGQA 298



 Score = 34.7 bits (76), Expect = 0.021
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 250 GKIPILDIQPTAIHQRAPCYLGSKNDVAE 336
           GK   LD+ P  IH+R+P +LGS +DV E
Sbjct: 301 GKKRALDLVPEKIHERSPIFLGSYDDVEE 329


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = +3

Query: 21  EGLMKYIEDKKRPK--TGKAYGARYVGSMVADVHRTIKYGGIFMYPATKSAPNGKLRLLY 194
           EGL KYI+  ++ K    K Y ARY+ S+VAD+HRT+ YGG+ M       P   LRL+Y
Sbjct: 287 EGLRKYIDTVRQGKGQNPKKYSARYICSLVADLHRTLLYGGVAM------NPRDHLRLVY 340

Query: 195 ECXPMAFIVTEAGGVATQWK 254
           E  P+AF+V +AGG ++  K
Sbjct: 341 EGNPLAFLVEQAGGKSSDGK 360



 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +1

Query: 247 NGKIPILDIQPTAIHQRAPCYLGSKNDVAE 336
           +GK  IL IQP  +HQR P +LGS  DVAE
Sbjct: 358 DGKRGILSIQPVKLHQRLPLFLGSLEDVAE 387


>At3g55800.1 68416.m06200 sedoheptulose-1,7-bisphosphatase,
           chloroplast / sedoheptulose-bisphosphatase identical to
           SP|P46283 Sedoheptulose-1,7-bisphosphatase, chloroplast
           precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase)
           (SBPASE) (SED(1,7)P2ASE) {Arabidopsis thaliana}
          Length = 393

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +3

Query: 75  YGARYVGSMVADVHRTI-KYGGIFMYPATKSAPNGKLRLLYECXPMAFIVTEAGGVAT 245
           Y  RY G MV DV++ I K  GIF    + +A   KLRLL+E  P+  ++  AGG ++
Sbjct: 287 YTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTA-KAKLRLLFEVAPLGLLIENAGGFSS 343


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 222 TEAGGVATQWKDTHSRH----TTDCHTSTCALLPRV*ERRR 332
           TE GG A+  + +H RH     +DC  + C L  R  ER R
Sbjct: 329 TEDGGKASTKQKSHKRHGRHHKSDCMCAICVLKRRKRERER 369


>At2g40610.1 68415.m05009 expansin, putative (EXP8) similar to
           expansin 2 GI:7025493 from [Zinnia elegans];
           alpha-expansin gene family, PMID:11641069
          Length = 253

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 209 GVHRDRGGWCRDPMERY 259
           G+  D GGWC  P++ +
Sbjct: 112 GLSNDNGGWCNPPLQHF 128


>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 21  EGLMKYIEDKKRPKTGKAYGA-RYVGSMVADVHRTIKYGGIFMYPATKSAPNGKL 182
           + ++ YI  ++R + G+  G  +++   VAD++  ++    ++Y   +   NGK+
Sbjct: 287 DNVLPYI--RQREQFGRPVGEFQFIQGKVADMYTALQSSRSYVYSVARDCDNGKV 339


>At3g01780.1 68416.m00118 expressed protein est hit,
          Length = 1176

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 55  DRKLERLTARAMSVLWWPTYTEPSSMVVFLCTPLQS 162
           DRKLE L  +A+  LW P   +P+ + +FL   + S
Sbjct: 728 DRKLEGLIHKAILELWRP---KPTELTLFLTKGVDS 760


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,648,727
Number of Sequences: 28952
Number of extensions: 174819
Number of successful extensions: 468
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)