Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B08
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0459 + 29217728-29217919,29218095-29218190,29219785-292198...    28   3.7  
01_06_0613 + 30615335-30615980,30616072-30616231,30616350-306163...    28   3.7  
05_06_0174 - 26149663-26149885,26150353-26151701                       27   8.5  

>02_05_0459 +
           29217728-29217919,29218095-29218190,29219785-29219895,
           29219984-29220293,29220745-29220835,29220976-29221285,
           29221469-29221617,29221914-29222418
          Length = 587

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 222 G*NS*WHSELKR*NRLWRILWITMNFLRPSAYNLNGFMVIKVCKL 88
           G NS W S LK+  +  ++  I+ + LR +A  +NGF   ++ KL
Sbjct: 499 GKNSFWDSLLKKQRQKIQVKDISDDLLREAARKINGFSGREIAKL 543


>01_06_0613 +
           30615335-30615980,30616072-30616231,30616350-30616398,
           30617561-30617674,30617975-30618031,30618227-30618337
          Length = 378

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 479 SR*FLFKQESDKNSDARFAAVEIKSFAEVEQTV-KTAKCECGDKEHAFLAIKEID 318
           SR  +F +  DKN+D R    E+K    +  +  K ++ +   +E+A L ++E+D
Sbjct: 261 SRLQIFFEMVDKNADGRITEAEVKEIIMLSASANKLSRLKEQAEEYAALIMEELD 315


>05_06_0174 - 26149663-26149885,26150353-26151701
          Length = 523

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 151 HCNPQNTP*SVLPLKFGMPLTVLSK-SACVGIVLAYSTIKV 270
           HC P   P SV      MPL  LSK + C G V+ YS++ V
Sbjct: 489 HCLPLYNPMSV------MPLIALSKGTRCSGQVIMYSSVDV 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,515
Number of Sequences: 37544
Number of extensions: 200150
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)