Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B08
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.006
SB_45292| Best HMM Match : VWA (HMM E-Value=1e-18)                     28   5.0  
SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_23355| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_2391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -3

Query: 416 EIKSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYVVYSAPFTPNGLTLIVLYARTIP 237
           ++  F ++   +K  K  C  K HA     E+ ++ +  Y   FTPN   ++++   TIP
Sbjct: 192 DVHRFEKISNIIKQFKLSCS-KLHAHFQSMEVKNSGFAAYIDVFTPNTYVMVIMSDTTIP 250

Query: 236 TQA 228
           + A
Sbjct: 251 SAA 253


>SB_45292| Best HMM Match : VWA (HMM E-Value=1e-18)
          Length = 223

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 350 EHAFLAIKEIDDNY---YVVYSAPFTPNGLTLIVLYARTIPTQADLDKTVSGIPNLSGRT 180
           +H   AI  I D Y    V+YS          ++ +    P + +L + VSGI  LSG +
Sbjct: 26  QHMKDAIISIIDTYGHSKVLYSVVVYGRTARTVIRFQDVFPNEDELKRRVSGIQALSGGS 85

Query: 179 D 177
           D
Sbjct: 86  D 86


>SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 342  CVLFVTAFTFRCFHRLFYFCEGFYFHGCESC 434
            C  F T  T +CFHR       + F G ++C
Sbjct: 917  CQYFTTETTCKCFHRSELRQVSYIFRGAKNC 947


>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 419 VEIKSFAEVEQTVKTAKCECGDKEH 345
           VE+ ++A+ EQ     KC C  K+H
Sbjct: 266 VEVHTYADDEQDCCQGKCNCSHKKH 290


>SB_23355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 484 QRPVNFYLNKNQIRILMHDSQPWK 413
           +R + FYL++  IR  M D + WK
Sbjct: 288 ERSLGFYLSRKTIRDFMRDIRQWK 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,677
Number of Sequences: 59808
Number of extensions: 257423
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)