Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B08
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93380-2|CAB07596.1| 340|Caenorhabditis elegans Hypothetical pr... 29 1.9
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical... 29 1.9
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein. 29 1.9
Z93380-3|CAB07600.1| 339|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z93380-1|CAB07598.2| 337|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z81587-1|CAB04701.1| 340|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 28 4.4
U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z81130-4|CAB03414.2| 512|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 27 7.6
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 27 7.6
>Z93380-2|CAB07596.1| 340|Caenorhabditis elegans Hypothetical
protein F28C12.2 protein.
Length = 340
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 220 SKSACVGIVLAYSTIKVSPFGVN 288
S+S C+ IVL +S I +S FG N
Sbjct: 244 SQSICISIVLQFSCIMISSFGSN 266
>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
protein Y75B8A.22 protein.
Length = 1353
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 410 KSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYV 303
K + E+E+ ++ AK D H F AIK+ DNY++
Sbjct: 104 KMYWELEENLRRAKTAFSDA-HFFTAIKKRIDNYFI 138
>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
Length = 1353
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 410 KSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYV 303
K + E+E+ ++ AK D H F AIK+ DNY++
Sbjct: 104 KMYWELEENLRRAKTAFSDA-HFFTAIKKRIDNYFI 138
>Z93380-3|CAB07600.1| 339|Caenorhabditis elegans Hypothetical
protein F28C12.4 protein.
Length = 339
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 220 SKSACVGIVLAYSTIKVSPFGVN 288
S+S C+ IVL + I VS FGVN
Sbjct: 245 SQSVCILIVLQFVCISVSSFGVN 267
>Z93380-1|CAB07598.2| 337|Caenorhabditis elegans Hypothetical
protein F28C12.1 protein.
Length = 337
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 220 SKSACVGIVLAYSTIKVSPFGVN 288
S+S C+ IVL ++ I +S FGVN
Sbjct: 243 SQSVCILIVLQFACIMLSSFGVN 265
>Z81587-1|CAB04701.1| 340|Caenorhabditis elegans Hypothetical
protein T06G6.1 protein.
Length = 340
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 220 SKSACVGIVLAYSTIKVSPFGVN 288
S+S C+ IVL +S +S FGVN
Sbjct: 245 SQSVCILIVLQFSCTMISSFGVN 267
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 449 DKNSDARFAAVEIKSFAEVEQTVKTAKCE 363
DK+S A+FAA+ KS AE++ KT E
Sbjct: 174 DKDSVAKFAALNTKSLAELKINGKTEVAE 202
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 449 DKNSDARFAAVEIKSFAEVEQTVKTAKCE 363
DK+S A+FAA+ KS AE++ KT E
Sbjct: 174 DKDSVAKFAALNTKSLAELKINGKTEVAE 202
>U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical
protein B0336.6 protein.
Length = 469
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 299 YSAPFTPNGLTLIVLYARTIPTQADLDKTVSGIPNLSGRTDYGVFCG 159
+ P PN L L + +R +PTQ D+D ++ G + YGVF G
Sbjct: 344 HDLPPPPNSL-LTGMSSR-MPTQDDMDDLPPPPESVGGSSAYGVFAG 388
>Z81130-4|CAB03414.2| 512|Caenorhabditis elegans Hypothetical
protein T23G11.5 protein.
Length = 512
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 1 ERELVSSFFFFFLKH---ENIFTFNNKNMSFI*FTNFDNHK 114
ER+ + F F +H +NIF F NK ++++ ++ + HK
Sbjct: 185 ERKTLFVFVFLHAQHVMGQNIFIFKNKILNYLIYSILNLHK 225
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
nucleotide exchange factorfor RAS protein.
Length = 1413
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3
Query: 311 YYVVYSAPFTPNGLTLIVLYARTIPTQADLDKTVSGIPNLSGRTDYGVFCGLQ*IS 144
+ + Y + TPN L ++L IPT L + G L+GR D GL IS
Sbjct: 686 FLISYRSFCTPNDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSHGLSAIS 741
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3
Query: 311 YYVVYSAPFTPNGLTLIVLYARTIPTQADLDKTVSGIPNLSGRTDYGVFCGLQ*IS 144
+ + Y + TPN L ++L IPT L + G L+GR D GL IS
Sbjct: 686 FLISYRSFCTPNDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSHGLSAIS 741
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,394,353
Number of Sequences: 27780
Number of extensions: 201709
Number of successful extensions: 448
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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