BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_B08 (502 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g48175.1 68414.m05377 deaminase-related similar to tRNA-speci... 31 0.58 At1g76160.1 68414.m08844 multi-copper oxidase type I family prot... 29 1.3 At5g51380.1 68418.m06370 F-box family protein contains Pfam PF00... 28 3.1 At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2... 28 3.1 At5g04690.1 68418.m00477 expressed protein 28 3.1 At5g48160.1 68418.m05949 tropomyosin-related contains weak simil... 27 5.4 At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 27 9.4 >At1g48175.1 68414.m05377 deaminase-related similar to tRNA-specific adenosine deaminase 2 (EC 3.5.4.-) (tRNA-specific adenosine-34 deaminase subunit TAD2) (Swiss-Prot:P47058) [Saccharomyces cerevisiae] Length = 122 Score = 30.7 bits (66), Expect = 0.58 Identities = 10/40 (25%), Positives = 21/40 (52%) Frame = +3 Query: 324 FLNCQECVLFVTAFTFRCFHRLFYFCEGFYFHGCESCIRI 443 ++ C+ C++ +A +F ++Y C F GC S + + Sbjct: 31 YVTCEPCIMCASALSFLGIKEVYYGCPNDKFGGCGSILSL 70 >At1g76160.1 68414.m08844 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam profile: PF00394 Multicopper oxidase Length = 541 Score = 29.5 bits (63), Expect = 1.3 Identities = 15/57 (26%), Positives = 25/57 (43%) Frame = -3 Query: 437 DARFAAVEIKSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYVVYSAPFTPNGLT 267 D + VE++ ++ T + G + + +YYVV S+ FT N LT Sbjct: 230 DHKMKVVEVEGTHTLQTTFSSLDVHVGQSYSVLVTADQTPRDYYVVVSSRFTSNVLT 286 >At5g51380.1 68418.m06370 F-box family protein contains Pfam PF00646: F-box domain; similar to F-box protein FBL2 (GI:6063090) [Homo sapiens] Length = 479 Score = 28.3 bits (60), Expect = 3.1 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = +1 Query: 313 LSSISLIAKNACSLSPHSHFAVFTVCSTSAKDFISTAANRASEFLSDSCLNRN*RDVGPT 492 L+S+ L+ NAC +P S+ + +C TS +ST ++ F+ +S L+ D G Sbjct: 125 LTSVDLV--NAC-FNPSSNSGIL-LCHTSISFHVSTDSSLNLNFVEESLLDNEMVDKGLR 180 Query: 493 VAG 501 V G Sbjct: 181 VLG 183 >At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1) (GLR3) plant glutamate receptor family, PMID:11379626 Length = 909 Score = 28.3 bits (60), Expect = 3.1 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = -3 Query: 359 GDKEHAFLAIKEIDDN--YYVVYSAPFTPNGLTLIV 258 G K A +A I N YV +S P+TP+G+ L+V Sbjct: 522 GQKYDAVVADTTISSNRSMYVDFSLPYTPSGVGLVV 557 >At5g04690.1 68418.m00477 expressed protein Length = 625 Score = 28.3 bits (60), Expect = 3.1 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -3 Query: 359 GDKEHAFLAIKEIDDNYYVVYSAPFTPNGLTLIVLYARTIPTQADL 222 GD+++ FLA K+ D N V++ A + P L + + T+ Q +L Sbjct: 375 GDRKYLFLADKDSDGN-SVLHLAGYPPPNYKLATVVSATLQMQREL 419 >At5g48160.1 68418.m05949 tropomyosin-related contains weak similarity to Tropomyosin, muscle (Allergen Ani s 3). (Swiss-Prot:Q9NAS5) [Anisakis simplex] Length = 574 Score = 27.5 bits (58), Expect = 5.4 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = -2 Query: 282 SEWTHFDCTIRQDYTNTG 229 S WTH DC IR TG Sbjct: 251 SHWTHTDCAIRDGQITTG 268 >At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing protein low similarity to transcription co-repressor Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile PF02671: Paired amphipathic helix repeat Length = 1378 Score = 26.6 bits (56), Expect = 9.4 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -3 Query: 476 R*FLFKQESDKNSDARFAAVEIKSFAEVEQ 387 R F FKQ+ KN A+ EIK E Q Sbjct: 651 RSFYFKQQDSKNLSAKSLLAEIKELKEKSQ 680 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,523,841 Number of Sequences: 28952 Number of extensions: 176251 Number of successful extensions: 430 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 426 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 430 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 888318720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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