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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B08
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48175.1 68414.m05377 deaminase-related similar to tRNA-speci...    31   0.58 
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot...    29   1.3  
At5g51380.1 68418.m06370 F-box family protein contains Pfam PF00...    28   3.1  
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2...    28   3.1  
At5g04690.1 68418.m00477 expressed protein                             28   3.1  
At5g48160.1 68418.m05949 tropomyosin-related contains weak simil...    27   5.4  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    27   9.4  

>At1g48175.1 68414.m05377 deaminase-related similar to tRNA-specific
           adenosine deaminase 2 (EC 3.5.4.-) (tRNA-specific
           adenosine-34 deaminase subunit TAD2) (Swiss-Prot:P47058)
           [Saccharomyces cerevisiae]
          Length = 122

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 324 FLNCQECVLFVTAFTFRCFHRLFYFCEGFYFHGCESCIRI 443
           ++ C+ C++  +A +F     ++Y C    F GC S + +
Sbjct: 31  YVTCEPCIMCASALSFLGIKEVYYGCPNDKFGGCGSILSL 70


>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 437 DARFAAVEIKSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYVVYSAPFTPNGLT 267
           D +   VE++    ++ T  +     G      +   +   +YYVV S+ FT N LT
Sbjct: 230 DHKMKVVEVEGTHTLQTTFSSLDVHVGQSYSVLVTADQTPRDYYVVVSSRFTSNVLT 286


>At5g51380.1 68418.m06370 F-box family protein contains Pfam
           PF00646: F-box domain; similar to  F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 479

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +1

Query: 313 LSSISLIAKNACSLSPHSHFAVFTVCSTSAKDFISTAANRASEFLSDSCLNRN*RDVGPT 492
           L+S+ L+  NAC  +P S+  +  +C TS    +ST ++    F+ +S L+    D G  
Sbjct: 125 LTSVDLV--NAC-FNPSSNSGIL-LCHTSISFHVSTDSSLNLNFVEESLLDNEMVDKGLR 180

Query: 493 VAG 501
           V G
Sbjct: 181 VLG 183


>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
           (GLR3) plant glutamate receptor family, PMID:11379626
          Length = 909

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 359 GDKEHAFLAIKEIDDN--YYVVYSAPFTPNGLTLIV 258
           G K  A +A   I  N   YV +S P+TP+G+ L+V
Sbjct: 522 GQKYDAVVADTTISSNRSMYVDFSLPYTPSGVGLVV 557


>At5g04690.1 68418.m00477 expressed protein
          Length = 625

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 359 GDKEHAFLAIKEIDDNYYVVYSAPFTPNGLTLIVLYARTIPTQADL 222
           GD+++ FLA K+ D N  V++ A + P    L  + + T+  Q +L
Sbjct: 375 GDRKYLFLADKDSDGN-SVLHLAGYPPPNYKLATVVSATLQMQREL 419


>At5g48160.1 68418.m05949 tropomyosin-related contains weak
           similarity to Tropomyosin, muscle (Allergen Ani s 3).
           (Swiss-Prot:Q9NAS5) [Anisakis simplex]
          Length = 574

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 282 SEWTHFDCTIRQDYTNTG 229
           S WTH DC IR     TG
Sbjct: 251 SHWTHTDCAIRDGQITTG 268


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
           protein low similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 476 R*FLFKQESDKNSDARFAAVEIKSFAEVEQ 387
           R F FKQ+  KN  A+    EIK   E  Q
Sbjct: 651 RSFYFKQQDSKNLSAKSLLAEIKELKEKSQ 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,523,841
Number of Sequences: 28952
Number of extensions: 176251
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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