Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B07
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 170 5e-43
SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08) 30 0.89
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08) 30 1.2
SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28) 29 2.7
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 29 2.7
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36) 28 4.7
SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05) 28 4.7
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 28 4.7
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 28 4.7
SB_46976| Best HMM Match : PAN (HMM E-Value=6.9e-05) 27 6.3
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0) 27 6.3
SB_50666| Best HMM Match : ig (HMM E-Value=2.8e-20) 27 8.3
SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_57915| Best HMM Match : Dynein_heavy (HMM E-Value=1.8) 27 8.3
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 170 bits (414), Expect = 5e-43
Identities = 78/105 (74%), Positives = 90/105 (85%)
Frame = +3
Query: 174 VYLFQYDSTHGRFKGTVEAVDGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFT 353
VY+F+YDSTHGRFKGTVEA DG LV+NGK ++VF+ +DP IPWG+ GA+YVVESTGVFT
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876
Query: 354 TTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVIS 488
T +KA HL GGAKKVIISAPSADAPMFV+GVN E YDPS V+S
Sbjct: 877 TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVS 921
>SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08)
Length = 696
Score = 30.3 bits (65), Expect = 0.89
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = -1
Query: 221 GTLETTVSRIILEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVNSDFRHDYGK 42
G+L T +I L K + + ++ ++ +E Q + ++NS+FRHD
Sbjct: 126 GSLNKTDLKIELGKRKLLTSGLKPVLVDRLKSYILEHESESQRGNDISSLNSNFRHDQVS 185
Query: 41 SIFSQRSHS 15
S+ + ++HS
Sbjct: 186 SVSADQNHS 194
>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
Length = 993
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = -1
Query: 221 GTLETTVSRIILEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVNSDFRHDYGK 42
G+L T +I L K + + ++ ++ +E Q + +NS+FRHD
Sbjct: 88 GSLNKTDLKIELGKRKLLTSGLKSVLVDRLKSYILEHESESQRGNDISRLNSNFRHDQVS 147
Query: 41 SIFSQRSHS 15
S+ + ++HS
Sbjct: 148 SVSADQNHS 156
>SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)
Length = 503
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 66 GINGFGRIGRLVLRASIDKGADVVAINDPFIGLD 167
G++ FG++ L +R ++DKG V+ + +G D
Sbjct: 137 GVSAFGQVISLNVRTNLDKGPGVILRQESSVGRD 170
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 299 NSMGIPLREHSYLLSVYDEV-SIYGLNGTLETTVSRIILEKVDHVVKTNERIIDSNNIGT 123
N+M E Y + YD V +I G + L+TT LEKV + R+I +N
Sbjct: 662 NAMDFEYHEDHYEVVNYDLVINIPGQDSVLDTTNFSDFLEKVLSFAEAEGRVIRNNEFAG 721
Query: 122 LIN 114
+ N
Sbjct: 722 MSN 724
>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
Length = 972
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 18 VTSLRKYTLTIIMSKIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD 167
+ S K T++ + G R ++ L ++ AD++ ++DP I LD
Sbjct: 213 LASFPKRDSTVVGDRCGTLSESRRAKINLARAVYSDADILLLDDPLISLD 262
>SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)
Length = 670
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 119 INRSTEHQATDATKTVNSDFRHDYGKSIFSQRSHS 15
+ +E Q + +NS+FRHD S+ + ++HS
Sbjct: 10 LEHESESQRGNNISRLNSNFRHDQVSSVSADQNHS 44
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 444 QLQTWEHQ-HLVRR*LLSWLH-PPSEQKLYQWL*THRLIQQRIQHQPDPME*HGDP 283
QLQ + Q L+RR L H +Q+L Q + + Q QHQ DP HG P
Sbjct: 190 QLQQQQQQIELLRRQLEEQQHINQQQQQLLQRAPENEPLVQPQQHQQDPSSFHGTP 245
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 401 NHLRTKC*CSHVCSWCQPG 457
+HLR+KC + +CS CQ G
Sbjct: 683 DHLRSKCPSTRLCSKCQSG 701
>SB_46976| Best HMM Match : PAN (HMM E-Value=6.9e-05)
Length = 699
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 165 DYMVYLFQYDSTHGRFKGTVEAVDGHLVVNGKKIAV 272
DY+ + ++ + R+ G +GH V++GK I+V
Sbjct: 659 DYLSHYYRTSALDNRYSGVSFKENGHKVMDGKLISV 694
>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1266
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 18 VTSLRKYTLTIIMSK-IGINGFGRIGRLVLRASIDKGADVVAINDPFIGLDYMV 176
V L K L++I + + ++G G+ RL L ++ GAD+ ++DP +D V
Sbjct: 536 VKRLPKGDLSMIGQRGVSLSG-GQRSRLSLARAVYSGADIFLLDDPLSAVDTQV 588
>SB_50666| Best HMM Match : ig (HMM E-Value=2.8e-20)
Length = 293
Score = 27.1 bits (57), Expect = 8.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 138 QQHRHPYQSKHGAPGDRC 85
QQ+ HPY H + GD C
Sbjct: 74 QQYGHPYPQSHSSRGDGC 91
>SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 179 VDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVNSDFRHDYGK 42
+D V K N R+I N +I++ T + D T + R +YG+
Sbjct: 517 LDTVTK-NSRVIQLQNYLPMISKETHQELADRTGLHVVELREEYGR 561
>SB_57915| Best HMM Match : Dynein_heavy (HMM E-Value=1.8)
Length = 185
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 290 GIPLREHSYLLSVYDEVSIYGLNGTLETTVS-RIILEKVDHVVKTNERIIDSNNIGTLIN 114
G+PL H L+ + + I+GL+ + T + R + D ++ T R S G
Sbjct: 12 GLPLTPHPELMLTFYILQIFGLHENADITKNQRETQQLFDGILSTLPRQTSSG--GKSSQ 69
Query: 113 RSTEHQATDATKTVNSDF 60
E A D + SDF
Sbjct: 70 EVIEELAADILSKIPSDF 87
>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 146 IDSNNIGTLINRSTEHQATDATKTVNSDFRHDYGKSIFSQRSHST 12
+DS N GT R+ Q D T +SD+ +D SQR+ +T
Sbjct: 222 VDSQNCGTPSKRTK--QTKDETSRPDSDYDYDTIDVSLSQRARAT 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,978
Number of Sequences: 59808
Number of extensions: 343238
Number of successful extensions: 964
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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