Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B06
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    26   3.1  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   3.1  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   3.1  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   4.1  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.2  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   7.2  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   9.5  
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    25   9.5  

>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -2

Query: 421 LLYQSISISAKLFLNRNTVILRSICRYQYILQSDNNNNFVTFFIILIIIYCNYSF*NPTL 242
           L    +S++ K  L    +I    C Y Y      ++ F +F    +++Y N  F  P  
Sbjct: 31  LFIPRLSLTVKYCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFF--PRF 88

Query: 241 FYNHSIN 221
              HSIN
Sbjct: 89  IRTHSIN 95


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -2

Query: 421 LLYQSISISAKLFLNRNTVILRSICRYQYILQSDNNNNFVTFFIILIIIYCNYSF*NPTL 242
           L    +S++ K  L    +I    C Y Y      ++ F +F    +++Y N  F  P  
Sbjct: 31  LFIPRLSLTVKYCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFF--PRF 88

Query: 241 FYNHSIN 221
              HSIN
Sbjct: 89  IRTHSIN 95


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -2

Query: 421 LLYQSISISAKLFLNRNTVILRSICRYQYILQSDNNNNFVTFFIILIIIYCNYSF*NPTL 242
           L    +S++ K  L    +I    C Y Y      ++ F +F    +++Y N  F  P  
Sbjct: 31  LFIPRLSLTVKYCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNKFF--PRF 88

Query: 241 FYNHSIN 221
              HSIN
Sbjct: 89  IRTHSIN 95


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -2

Query: 421 LLYQSISISAKLFLNRNTVILRSICRYQYILQSDNNNNFVTFFIILIIIYCNYSF*NPTL 242
           L    +S++ K  L    +I    C Y Y      ++ F +F    +++Y N  F  P  
Sbjct: 31  LFIPRLSLTVKYCLAVKLLIYLLYCWYIYSEVPSVSSKFRSFTFGCVVVYHNKFF--PRF 88

Query: 241 FYNHSIN 221
              HSIN
Sbjct: 89  IRTHSIN 95


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 465 PTPST--KDLQCLSWNPFYTRVYQFQQSC 385
           PT S   K L+CL W     +V + Q SC
Sbjct: 573 PTESLEYKKLRCLRWKSLTEQVVELQPSC 601


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 340 DIYKYFLILQYFCLKTALLK 399
           D+YKY L+LQ   L  ALL+
Sbjct: 244 DVYKYDLVLQIRFLNRALLR 263


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 394 AKLFLNRNTVILRSICRYQYILQSDN 317
           AKL++NR TV+LR     + +  SDN
Sbjct: 261 AKLYMNRATVLLRLKRPEEALSDSDN 286


>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 328 VVYTDIYKYFLILQYFCLKTALLKLIYSGIKGIPTQALQVFSAGC 462
           V+Y +   Y + +   C+  +LL   ++    IPT + ++++ GC
Sbjct: 93  VLYEETVGY-VSMDTLCIAISLLDRCFTVKPTIPTTSFKIYAIGC 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,515
Number of Sequences: 5004
Number of extensions: 32607
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)