Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B06
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998...    27   7.3  
02_01_0104 - 767490-767627,768025-768158,768971-769229,769315-76...    27   9.7  

>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
            21699927-21699992,21701064-21701203,21701424-21701473,
            21701608-21702045,21702757-21702839,21702941-21702977,
            21703366-21703457,21703531-21703615,21703950-21704029,
            21704049-21704105,21704350-21704747,21706322-21707223,
            21707331-21707421,21708123-21710273,21710375-21710813,
            21711180-21711299
          Length = 1836

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 475  PLQPYTQH*RLAVLELESLLYQSISISAKLFL-----NRNTVILRSICRY 341
            P+QP  +  +L +LEL  L YQ I+   K+F      N N   +RS CR+
Sbjct: 1457 PIQPLPESLQLHLLELYELHYQMITF-GKVFCTKSKPNCNACPMRSECRH 1505


>02_01_0104 -
           767490-767627,768025-768158,768971-769229,769315-769403,
           769624-769774,769860-770003,770611-770730,771490-771658,
           771789-772087
          Length = 500

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 14  IMIRNAGHMVPTDQXK 61
           + + NAGHMVP DQ K
Sbjct: 454 LKVHNAGHMVPMDQPK 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,221,655
Number of Sequences: 37544
Number of extensions: 181073
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)