Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B06
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 31   0.80 
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  31   0.80 
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   2.5  
SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)                   28   5.7  
SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)                    28   5.7  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   28   5.7  
SB_31971| Best HMM Match : Tyrosinase (HMM E-Value=3e-06)              27   9.9  
SB_30524| Best HMM Match : TPR_2 (HMM E-Value=2.9e-36)                 27   9.9  
SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)                 27   9.9  

>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 540 PCSARVPPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFYTRVYQFQQS 388
           P  +R+P +   P++ G P+     P PST+D +     P  TR Y   Q+
Sbjct: 315 PTKSRIPLMIKSPAKSGRPTPQASRPRPSTQDFE----PPQLTRYYSQDQA 361


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 540 PCSARVPPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFYTRVYQFQQS 388
           P  +R+P +   P++ G P+     P PST+D +     P  TR Y   Q+
Sbjct: 454 PTKSRIPLMIKSPAKSGRPTPQASRPRPSTQDFE----PPQLTRYYSQDQA 500


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -3

Query: 540 PCSARVPPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFYTRVYQFQQS 388
           P +A   P    PS   AP  AP    PST      S  P+Y +  Q Q S
Sbjct: 108 PAAAAPAPAPAAPSAAAAP--APVRSVPSTSPSSVRSATPYYPQTQQQQSS 156


>SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)
          Length = 600

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 469 VGGVARSANSRRAPEYWWHTG 531
           VGG    A S  APE+W+H G
Sbjct: 434 VGGTMMLACSSNAPEFWFHHG 454


>SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)
          Length = 440

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = -2

Query: 400 ISAKLFLN----RNTVILRSICRYQYI 332
           I+ KLF++    RNT ILRS C+ QY+
Sbjct: 356 ITRKLFVDFLCFRNTAILRSSCKLQYL 382


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = -2

Query: 400 ISAKLFLN----RNTVILRSICRYQYI 332
           I+ KLF++    RNT ILRS C+ QY+
Sbjct: 409 ITRKLFVDFLCFRNTAILRSSCKLQYL 435


>SB_31971| Best HMM Match : Tyrosinase (HMM E-Value=3e-06)
          Length = 364

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 469 VGGVARSANSRRAPEYWWHTG 531
           +GGV     S  APE+W+H G
Sbjct: 241 IGGVMSLDASANAPEFWFHHG 261


>SB_30524| Best HMM Match : TPR_2 (HMM E-Value=2.9e-36)
          Length = 451

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 322 HFVV--YTDIYKYFLILQYFCLK--TALLKLIYSGI 417
           HF+   Y +  +YFL+ +Y+  K  T LL  IY GI
Sbjct: 317 HFIRLNYKEALEYFLLAEYYFTKTDTHLLSKIYQGI 352


>SB_30523| Best HMM Match : TPR_2 (HMM E-Value=9.9e-30)
          Length = 908

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 322 HFVV--YTDIYKYFLILQYFCLK--TALLKLIYSGI 417
           HF+   Y +  +YFL+ +Y+  K  T LL  IY GI
Sbjct: 282 HFIRLNYKEALEYFLLAEYYFTKTDTHLLSKIYQGI 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,561,492
Number of Sequences: 59808
Number of extensions: 235506
Number of successful extensions: 638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)