Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B06
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-10|CAE17930.1|  177|Caenorhabditis elegans Hypothetical p...    27   6.6  
Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z79598-5|CAB01863.1|  367|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z75544-5|CAJ28586.1|  112|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z74041-6|CAA98517.2|  337|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z83238-10|CAE17930.1|  177|Caenorhabditis elegans Hypothetical
           protein T08G3.13 protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = -2

Query: 406 ISISAKLFLNRNTVILRSICRYQYILQSDNNNNFVTFFI 290
           + +  + F    T +L+++C +Q + +  N+N+ +  FI
Sbjct: 6   LCVGGQKFTTTKTTLLKNVCLFQKMAEIKNHNSTMCMFI 44


>Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical
           protein K03D7.9 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 364 ILRSICRYQYILQSDNNNNFVTFFIILIIIYC 269
           ++  I +Y++++   N +  +TF  +L I YC
Sbjct: 43  VILYISKYKWLVTGSNLSKLITFAYVLSIFYC 74


>Z79598-5|CAB01863.1|  367|Caenorhabditis elegans Hypothetical
           protein C44H4.6 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 343 YQYILQSDNNNNFVTFFIILIIIYCNYSF-*NPTLFYNHSIN*FIFLFLRDYNF 185
           Y Y++Q +N  NFV  F+   + Y +  F  N      +SI  ++F  LR   F
Sbjct: 95  YYYVMQQENCLNFVMEFMPKDLAYVHRQFAHNDKQMPAYSIKLYMFQLLRGIGF 148


>Z75544-5|CAJ28586.1|  112|Caenorhabditis elegans Hypothetical
           protein K02A11.4 protein.
          Length = 112

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 364 LQYFCLKTALLKLIYS-GIKGIPTQALQVFS 453
           +QY CL +AL  L+ S GI  IP   + V+S
Sbjct: 1   MQYICLVSALFVLVLSRGIPTIPQPRIDVWS 31


>Z74041-6|CAA98517.2|  337|Caenorhabditis elegans Hypothetical
           protein T03F7.3 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 295 FIILIIIYCNYSF*NPTLFYNHSIN*FIFLFLRDYNF 185
           F+I+ +    YSF   T +YN S N F FL +  + F
Sbjct: 258 FVIMAVPVNYYSFSIITDYYNQSANNFCFLIMSLHGF 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,215
Number of Sequences: 27780
Number of extensions: 182326
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)