Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B06
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.5  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   2.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   3.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 294 LSFLSLYIVIIVFKTQHYFITIALINLYF 208
           LSF  ++  II F   HYF        YF
Sbjct: 282 LSFAFIFATIIQFAVVHYFTKYGSGECYF 310


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 261 VFKTQHYFITIALINLYFFF*EIIISK 181
           +FK  H+F  + +  ++ +F E  I K
Sbjct: 1   MFKNYHFFFILVITLIFLYFGEADIKK 27


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 307 FVTFFIILIIIYCNYSF*NPTLFY--NHSIN*FIFLFL 200
           FV   I  I+I+ N S   PT +Y  N +++  +FL L
Sbjct: 48  FVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLIL 85


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 499 ESWRSERRPLQPYTQH*RLAVLELESLLYQSISISAKLFLNRN 371
           E+W  ++   Q Y +  R  +LE E  +  S +   KL L R+
Sbjct: 41  EAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERS 83


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -3

Query: 516 IFWCPSR-VGAPSDAPYNPTPSTKDLQCLSWN 424
           + W  S  +G+P     N TP     QCL +N
Sbjct: 309 LVWAISAAIGSPIVLGLNNTPDRTPDQCLFYN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,054
Number of Sequences: 438
Number of extensions: 2775
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)