Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B06
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10410.1 68416.m01248 serine carboxypeptidase III, putative s...    28   4.6  
At1g55580.1 68414.m06361 scarecrow transcription factor family p...    27   6.1  
At3g28007.1 68416.m03496 nodulin MtN3 family protein contains Pf...    27   8.1  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    27   8.1  

>At3g10410.1 68416.m01248 serine carboxypeptidase III, putative
           similar to serine carboxypeptidase III from Oryza sativa
           SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
           vulgare SP|P21529, Triticum aestivum SP|P11515; contains
           Pfam profile PF0450 serine carboxypeptidase
          Length = 516

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 2   ELVEIMIRNAGHMVPTDQXKVGYR 73
           +L  + +R+AGHMVP DQ K   +
Sbjct: 463 QLSFLKVRDAGHMVPMDQPKAALK 486


>At1g55580.1 68414.m06361 scarecrow transcription factor family
           protein contains Pfam profile PF03514: GRAS family
           transcription factor
          Length = 445

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = -2

Query: 391 KLFLNRNTVILRSICRYQYILQSDNNNN 308
           ++ ++ +TV   S+C+ Q++ ++ NNN+
Sbjct: 112 EMTMSNSTVFTSSVCKEQFLFRTKNNNS 139


>At3g28007.1 68416.m03496 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family; similar to LIM7 GI:431154
           (induced in meiotic prophase in lily microsporocytes)
           from [Lilium longiflorum]
          Length = 251

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -2

Query: 439 VLELESLLYQSISISAKLFLNRNTVILRSICRYQYILQSDNNNNFVTFFIILIIIYCNY 263
           V++ +S+ Y   S+S   FLN    ++ ++ ++   +   N    V+  + LI+  C Y
Sbjct: 156 VIKTKSVKYMPFSLSLANFLNGVVWVIYALIKFDLFILIGNGLGTVSGAVQLILYACYY 214


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 522 PPIFWCPSRVGAPSDAPYNPTPSTKDLQCLSWNPFY 415
           PP+  CP    +P    Y  TPS ++       P+Y
Sbjct: 566 PPVVNCPPTTQSPPPPKYEQTPSPREYYPSPSPPYY 601


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,368,511
Number of Sequences: 28952
Number of extensions: 156872
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)