Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B04
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   0.85 
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   4.5  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    24   6.0  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    24   7.9  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    24   7.9  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    24   7.9  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   7.9  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    24   7.9  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 10  EPSRMDPNSEWLPNSI 57
           EP  +DPNS W PN +
Sbjct: 315 EPEGLDPNSWWYPNGL 330


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 112 LHLIRKNEGYKIIIVVQRVLN 50
           L LI+  + +K+I+ VQR+++
Sbjct: 200 LDLIKSTDAFKVILCVQRIIS 220


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 127 TVARSRANINS*HWWNITTN 186
           T A   AN ++ H+WN+T+N
Sbjct: 526 TPALMPANTDTRHYWNLTSN 545


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +2

Query: 188 IEKCAENCISTPEYNPVCGSDNKTYKNQGRLFCAQNC 298
           + K   NC S   +   C   +++   +   FC  NC
Sbjct: 185 VRKFCYNCASDEHFGDDCTLPSRSNYPESTAFCEANC 221


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  PEWIPIQNGYRIQYPLDNNYNF 82
           PE+  + N Y+++Y LD+   F
Sbjct: 73  PEFKALANSYKLKYGLDSGIRF 94


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 198 ARRIAFQHQNTTPCVV 245
           A ++ FQ QNT PC V
Sbjct: 479 AMQLKFQSQNTVPCPV 494


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 80  NYNCCPKGIEFGNHSELGSI 21
           +YN  P  + FGNH +LG +
Sbjct: 287 DYNV-PFAVNFGNHDDLGDL 305


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 109 AVPKPNTVARSRANINS*HWWNITTN 186
           + P PN V +    +N+  W N+T++
Sbjct: 21  SAPGPNAVLQEGGGVNTVSWSNLTSS 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,884
Number of Sequences: 5004
Number of extensions: 34086
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)