Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B04
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020     28   1.8  
10_08_0041 - 14374684-14377339,14377371-14378233                       27   3.2  
09_02_0240 - 6157855-6157891,6158040-6158329                           27   5.6  
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784...    27   5.6  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    26   9.8  
05_03_0245 + 10890555-10890962                                         26   9.8  
05_03_0244 + 10857139-10857516                                         26   9.8  
03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891...    26   9.8  

>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
          Length = 722

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 291 WAQNSLPWFL*VLLSL--PHTGLYSGVEMQFSA 199
           W +N +  F  VL +L  PH  LY  V+M+F+A
Sbjct: 333 WQENCMEQFKLVLEALHQPHRNLYIAVDMEFTA 365


>10_08_0041 - 14374684-14377339,14377371-14378233
          Length = 1172

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 291 WAQNSLPWFL*VLLSL--PHTGLYSGVEMQFSA 199
           W +N +  F  VL +L  PH  LY  V+M+F+A
Sbjct: 652 WRENCMEQFKLVLEALHQPHRHLYIAVDMEFAA 684


>09_02_0240 - 6157855-6157891,6158040-6158329
          Length = 108

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 188 IEKCAENCISTPEYNPVCGSDNKTYKNQGRLFCAQNCGVKVTLARQAPC 334
           I  C+ NC  TP+Y   C    +    Q + +C   C    +L  Q PC
Sbjct: 55  INTCSSNCSITPQY---CDQCRRESNQQCQNYCYNGCLYGCSL--QHPC 98


>07_03_1769 +
           29377784-29377878,29377993-29378180,29378340-29378472,
           29378580-29378715,29378996-29379072,29379162-29380830,
           29380935-29381018,29381120-29381224,29381302-29381358
          Length = 847

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 348 FDEDGHGACLAKVTLTPQFWAQNS 277
           +D DG GACL + T  P F+  +S
Sbjct: 140 YDADGEGACLKRYT-NPSFFTSHS 162


>09_02_0250 +
           6266818-6267029,6267230-6267287,6267999-6268118,
           6272359-6272511,6273381-6273586,6274280-6274733,
           6276573-6276610,6276923-6277046,6277184-6277246,
           6277350-6277412,6277526-6278152,6278267-6278294,
           6278373-6278413,6278689-6278851,6278987-6279039,
           6279217-6279262,6279373-6279444,6279578-6279741,
           6279968-6280099,6280249-6280565,6280721-6280892,
           6281009-6281107,6281275-6281349,6281446-6281504,
           6281647-6281836,6281982-6282020
          Length = 1255

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 8   GNRPEWIPIQNGYRIQYPLDNNYN 79
           G RP   PI+ GYR +    NN+N
Sbjct: 232 GYRPPLAPIRQGYRHRSSNSNNHN 255


>05_03_0245 + 10890555-10890962
          Length = 135

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 197 CAENCISTPEYNPVCGSDNKTYKNQGRLFCAQNC 298
           C   C+ T      CG  NK  K+ GR  C   C
Sbjct: 73  CGGRCVDTGASGEHCGGCNKACKH-GRSCCGGRC 105


>05_03_0244 + 10857139-10857516
          Length = 125

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 197 CAENCISTPEYNPVCGSDNKTYKNQGRLFCAQNC 298
           C   C+ T      CG  NK  K+ GR  C   C
Sbjct: 64  CGGRCVDTGASGEHCGGCNKACKH-GRSCCGGRC 96


>03_06_0732 -
           35788417-35788485,35788776-35788871,35788963-35789148,
           35789898-35789959,35790063-35790304,35790418-35791517
          Length = 584

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 4   GREPSRMDPNSEWLPNSIPF 63
           GR PS   P+S W+P S+ F
Sbjct: 488 GRAPSPRSPSSPWMPFSMLF 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,146,822
Number of Sequences: 37544
Number of extensions: 224858
Number of successful extensions: 434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)