Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B04
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    30   0.51 
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    29   1.2  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    28   1.6  
At1g25540.1 68414.m03171 phytochrome and flowering time regulato...    27   2.7  
At5g23910.1 68418.m02808 kinesin motor protein-related                 26   6.3  
At5g39080.1 68418.m04728 transferase family protein similar to a...    26   8.3  

>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +3

Query: 42   VTEFNTLWTTIIIL*PSFFLIKCSSQTKHRCQVKGKHQLLALVEHHDKQLRNARRIAFQH 221
            V++F   +   +I   +  L  CSS    +  +  K Q L L E   K+L+NA+ I   +
Sbjct: 911  VSQFGVKFAGFLIPFVNKLLDLCSSSLISQGNLYHKKQCLDLAE---KELQNAKEILIAN 967

Query: 222  QNTTPCVVAIIKLTKT 269
            Q    CV   +KL  T
Sbjct: 968  QRDFSCVKCKLKLEVT 983


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +3

Query: 99  LIKCSSQTKH-RCQVKGKHQLLALV-EHHDKQLRNARRIAFQHQ 224
           ++K S ++K  R  +K KH++L  V EHH K+ ++A+++    +
Sbjct: 1   MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRK 44


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 237 TGLYSGVEMQFSAHFSIVCRDVPPVLGVDVCP*PG 133
           T   S   + FS +FS+   D+P    +D+ P PG
Sbjct: 266 TNKLSDEVVSFSRYFSVTLPDIPLFRSIDILPLPG 300


>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
           protein (PFT1) PMID: 12815435
          Length = 836

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 117 QTKHRCQVKGKHQLLALVEHHDKQLRNARRIAFQHQNT 230
           Q +H+ Q + +HQL  L +HH +Q +  ++   QHQ T
Sbjct: 721 QQQHQQQQQQQHQLSQL-QHHQQQQQQQQQQQQQHQLT 757


>At5g23910.1 68418.m02808 kinesin motor protein-related 
          Length = 665

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 293 FGHKIVFPGFCKFYYRYHTRGCILVL 216
           FG + +F GF KFY  + T   IL+L
Sbjct: 398 FGRRGIFSGFFKFYGSHGTAYLILLL 423


>At5g39080.1 68418.m04728 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 463

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 172 STSARS*CLPLTWQRCLVWELHLIRKNEGYKIIIVVQRVLNSVTILN 32
           S SA S  LPLT+   + ++L  + +   Y+I  V +   +SV + N
Sbjct: 18  SDSAESLSLPLTYFDLIYYKLRAVERVIFYRITNVTRPFFDSVIVPN 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,138
Number of Sequences: 28952
Number of extensions: 183630
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)