Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B03
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 164 7e-42
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 29 0.62
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 1.4
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 27 1.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 1.9
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 2.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 3.3
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 4.4
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 5.8
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 25 5.8
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 164 bits (399), Expect = 7e-42
Identities = 72/107 (67%), Positives = 89/107 (83%)
Frame = +1
Query: 244 KRVLATNPIVEMDGDEMTRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAA 423
+++ NP+VEMDGDEMTR+IW I+EKL+ PY+ + YYDLG+ RD T+DQ+T+DAA
Sbjct: 12 QKITVKNPVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAA 71
Query: 424 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 564
AILK++VGIKCATITPDE RV+E+ LKKMW SPNGTIRNIL GTVF
Sbjct: 72 KAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVF 118
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 28.7 bits (61), Expect = 0.62
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 176 FLPTIFTWHFIKSSTLLNVSATISTCQISAQVAPPMYTMIS*RGCSKL 33
F+ TI+ F+KS+ + +V +T+ C AQ + +Y S CS +
Sbjct: 429 FISTIYILPFLKSTIVSSVQSTLQVC--GAQTSDRLYISKSYEFCSSV 474
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 130 RVELFIKCHVKMVGRNAKKLLKYVSELTPIHSRNY 234
+V L ++ V N + + VS L P+HSR Y
Sbjct: 1047 KVILISISRLRQVDENTNSIKRIVSRLQPLHSRQY 1081
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 397 DDQVTIDAAHAILKHNVGIKCATITPDEQRVEEFKLKKMWL 519
DD VT + AIL+H V + P E+ V E + ++W+
Sbjct: 56 DDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWM 96
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 441 MFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIRENKLFLNLSPNY 301
+F + V RVN+ L+ S +V + I+ I EN F L NY
Sbjct: 387 LFDWIVERVNKALVTSDNSVSNSIGILDIYGFEIFENNSFEQLCINY 433
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 197 YFNNFFAFLPTIFTWHFIKSSTLLNVSATISTCQISAQ 84
Y NN+++ P+ FT +L +V + + TC SA+
Sbjct: 634 YLNNWYSVKPSSFTKGLNNKPSLEDVFSNLETCYESAK 671
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -1
Query: 423 SRVNRHLIVSSVTVRQTQIIVKAVQLNIRENKLFLN 316
S VN++ +SS +++ Q+ V+A I+ +++FLN
Sbjct: 394 SLVNKNYEISSGKLKERQVAVRARIEGIKAHEMFLN 429
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 384 VRQTQIIVKAVQLNIRENKLFLNLSPNYAGHLISIHFN 271
++Q + VK V L+ K FL +PN A H ++ N
Sbjct: 409 LKQLEKCVKLVSLDTANEKHFLKHTPNSAAHQSLLNTN 446
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -1
Query: 564 EYSPTEDVTNCSIWTQ---PHLFQFELFNSLFIRSDSGT 457
E++ TED+ NC TQ P L +EL + F +S +GT
Sbjct: 103 EFTTTEDIENCEETTQVLPPRLVVYELRLTNF-KSYAGT 140
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 144 YKVPRKNGRKERKKVVKICERTYTYSFKK 230
Y PR+NG ++ +VV RT F+K
Sbjct: 4 YNPPRRNGNSKKNEVVITGGRTQRIDFEK 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,886
Number of Sequences: 5004
Number of extensions: 48930
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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