Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B03
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 171 2e-43
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 171 3e-43
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 134 6e-32
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 101 5e-22
11_01_0623 - 4998236-4999606 30 1.5
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 30 1.5
12_02_0129 - 13981684-13982529 29 2.6
12_02_0112 + 13783758-13784717 29 2.6
05_05_0377 - 24498664-24500215,24500306-24500643 28 5.9
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 28 5.9
01_06_0951 + 33301850-33302175,33302318-33303216,33303327-33303934 27 7.8
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 171 bits (417), Expect = 2e-43
Identities = 76/107 (71%), Positives = 90/107 (84%)
Frame = +1
Query: 244 KRVLATNPIVEMDGDEMTRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAA 423
+++ NPIVEMDGDEMTRI W IK+KLIFP++ LD YYDLG+ HRDATDD+VT++AA
Sbjct: 4 EKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAA 63
Query: 424 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 564
A LK+NV IKCATITPDE RV+EF LK+MW SPNGTIRNI+ GTVF
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVF 110
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 171 bits (416), Expect = 3e-43
Identities = 75/106 (70%), Positives = 89/106 (83%)
Frame = +1
Query: 247 RVLATNPIVEMDGDEMTRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAH 426
++ NPIVEMDGDEMTR+ W IK+KLIFP+++LD Y+DLGLP+RD TDD+VT++AA
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAE 64
Query: 427 AILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 564
A LK+NV IKCATITPDE RV+EF LK MW SPNGTIRNIL GTVF
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVF 110
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 134 bits (323), Expect = 6e-32
Identities = 69/117 (58%), Positives = 80/117 (68%), Gaps = 18/117 (15%)
Frame = +1
Query: 268 IVEMDGDEMTRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNV 447
+ GDEMTR+IW IK+KLIFP++ LD YYDLGLP+RDAT D+VTI++A A LK+NV
Sbjct: 37 VTRNSGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNV 96
Query: 448 GIKCATITP------------------DEQRVEEFKLKKMWLSPNGTIRNILGGTVF 564
IKCATITP DE RV+EF L MW SPNGTIRNIL GTVF
Sbjct: 97 AIKCATITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVF 153
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 101 bits (241), Expect = 5e-22
Identities = 50/81 (61%), Positives = 61/81 (75%)
Frame = +1
Query: 322 EKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKCATITPDEQRVEEFK 501
+ LIFPY++LD Y+DLGL +RDATDD+VT+++A A L T+T DE RV+EFK
Sbjct: 99 DDLIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFK 157
Query: 502 LKKMWLSPNGTIRNILGGTVF 564
LK MW SPNGTIRNIL GTVF
Sbjct: 158 LKSMWRSPNGTIRNILNGTVF 178
>11_01_0623 - 4998236-4999606
Length = 456
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 355 CLYYDLGLPHRDATDDQVTIDAAHAILKHNVGI 453
C YYD G+ H +DD V + A A+ VG+
Sbjct: 22 CYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGV 54
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 211 TPIHSRNYGTAKRVLATNPIVEMDGDEMTRIIWAKIKEK 327
TP+ SR Y T KR L T +V++ ++ + +I K+ EK
Sbjct: 418 TPVVSRTYSTNKRPLPTTEVVKLT-EQCSDLILHKLAEK 455
>12_02_0129 - 13981684-13982529
Length = 281
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 364 YDLGLPHRDATDDQVTIDAAHAILKHNVGIKCATITP 474
+D GL HRD D V +DA + ++G+ +T +P
Sbjct: 95 HDAGLMHRDLKPDNVLVDARGNLKICDLGLSQSTASP 131
>12_02_0112 + 13783758-13784717
Length = 319
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 364 YDLGLPHRDATDDQVTIDAAHAILKHNVGIKCATITP 474
+D GL HRD D V +DA + ++G+ +T +P
Sbjct: 133 HDAGLMHRDLKPDNVLVDARGNLKICDLGLSQSTASP 169
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 527 FGLSHIFFSLNSSTLCSSGVIVAHLMPTLCF 435
+ S +F LN + +C + L+PT+C+
Sbjct: 343 YASSECYFGLNLNPMCKPSEVAYTLIPTMCY 373
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 459 TFDADIMFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIREN 331
+F AD++F Y V RHL + + +T+ V ++ + E+
Sbjct: 919 SFVADVLFPYARDNVRRHLAATYGSSEETRADVALLRAQVEED 961
>01_06_0951 + 33301850-33302175,33302318-33303216,33303327-33303934
Length = 610
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 527 FGLSHIFFSLNSSTLCSSGVIVAHLMPTLCF 435
+ S +F LN + +C + L+PT+C+
Sbjct: 338 YASSECYFGLNLNPMCKPSDVAYTLIPTMCY 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,814
Number of Sequences: 37544
Number of extensions: 294461
Number of successful extensions: 655
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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